RNA id: TU521912


Basic Information

Item Value
RNA id TU521912
length 337
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G454586
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 722955 ~ 724365 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTACCATCACCTACTCTGCTAAAATCCATATTGTAGTGCTTTATCGTCCCCCAGGTCAGCTAGGTAACTTCTTGGAGGAGTTAGATGTGTTACTATCATCCTTCCCTGAGGATGGTACTCCTCTGCTAGTACTTGGAGATTTCAACATCCATCTAGACAAACCTCAGGCTGCTGACTTCCGCACTCTGCTTGCCTCATTTGATCTCAAGCGAGTGTCTACTACAGCTACCCACAAATCAGAACAACCTCCTTGACAACAACCAGTCTGGCTTCAAGAGTGGCCACTCAACTGAGACTGCCCTGCTCTCAGTCACTGAAGCCCTGAGACTGGCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521865 lncRNA downstream 55113 650216 ~ 667842 (-) True G454545
TU521856 lncRNA downstream 96755 625919 ~ 626200 (-) True G454538
TU521846 lncRNA downstream 108383 614363 ~ 614572 (-) True G454528
TU521843 lncRNA downstream 110488 611519 ~ 612467 (-) True G454525
TU521790 lncRNA downstream 166036 556268 ~ 556919 (-) True G454479
TU521919 lncRNA upstream 9093 733458 ~ 735906 (-) True G454593
TU521942 lncRNA upstream 124792 849157 ~ 861657 (-) False G454615
TU521944 lncRNA upstream 136096 860461 ~ 867291 (-) True G454615
TU521975 lncRNA upstream 201699 926064 ~ 926309 (-) True G454639
TU521985 lncRNA upstream 258218 982583 ~ 982844 (-) True G454649
CI01000320_00688829_00696138.mRNA mRNA downstream 26767 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00586900_00592523.mRNA mRNA downstream 130432 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_00442550_00456381.mRNA mRNA downstream 266568 442124 ~ 456387 (-) True CI01000320_00442550_00456381
CI01000320_00420198_00423170.mRNA mRNA downstream 299785 419963 ~ 423170 (-) True CI01000320_00420198_00423170
CI01000320_00388838_00393457.mRNA mRNA downstream 329498 388507 ~ 393457 (-) True CI01000320_00388838_00393457
CI01000320_00745852_00758696.mRNA mRNA upstream 20665 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00935826_00945755.mRNA mRNA upstream 210067 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_01042859_01043564.mRNA mRNA upstream 317659 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
CI01000320_01176457_01181900.mRNA mRNA upstream 450370 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
CI01000320_01207179_01217428.mRNA mRNA upstream 482814 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
TU521811 other downstream 194403 527059 ~ 528552 (-) False G454495
TU521809 other downstream 194745 527059 ~ 528210 (-) False G454495
TU521812 other downstream 194745 527059 ~ 528210 (-) False G454495
TU521676 other downstream 372753 350103 ~ 350202 (-) True G454374
TU522002 other upstream 327103 1051468 ~ 1055895 (-) True G454663
TU522025 other upstream 416877 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 611914 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 702418 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 702418 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603

Expression Profile