RNA id: TU521813


Basic Information

Item Value
RNA id TU521813
length 423
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G454495
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 527059 ~ 528552 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATGTAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAAGAGAAGAGCCTTGGTGAGAGAAGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTGTAGAAAGTCAACCATCACTGCAGCCCTCCACCAGTTGGGGCTTTATGGCAGAGTGGCCCGACGGAAGCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521767 lncRNA downstream 38415 488541 ~ 488862 (-) True G454460
TU521766 lncRNA downstream 38804 488227 ~ 488473 (-) True G454459
TU521749 lncRNA downstream 45649 481273 ~ 481628 (-) True G454445
TU521736 lncRNA downstream 46680 479069 ~ 480597 (-) True G454432
TU521746 lncRNA downstream 94306 432453 ~ 432971 (-) True G454442
TU521790 lncRNA upstream 28058 556268 ~ 556919 (-) True G454479
TU521843 lncRNA upstream 83309 611519 ~ 612467 (-) True G454525
TU521846 lncRNA upstream 86153 614363 ~ 614572 (-) True G454528
TU521856 lncRNA upstream 97709 625919 ~ 626200 (-) True G454538
TU521864 lncRNA upstream 122006 650216 ~ 729367 (-) False G454545
CI01000320_00442550_00456381.mRNA mRNA downstream 70890 442124 ~ 456387 (-) True CI01000320_00442550_00456381
CI01000320_00420198_00423170.mRNA mRNA downstream 104107 419963 ~ 423170 (-) True CI01000320_00420198_00423170
CI01000320_00388838_00393457.mRNA mRNA downstream 133820 388507 ~ 393457 (-) True CI01000320_00388838_00393457
CI01000320_00346954_00349228.mRNA mRNA downstream 177832 346231 ~ 349445 (-) False CI01000320_00346954_00349228
CI01000320_00331521_00343779.mRNA mRNA downstream 183498 331481 ~ 343779 (-) True CI01000320_00331521_00343779
CI01000320_00586900_00592523.mRNA mRNA upstream 57783 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_00688829_00696138.mRNA mRNA upstream 160478 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00745852_00758696.mRNA mRNA upstream 216820 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00935826_00945755.mRNA mRNA upstream 406222 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_01042859_01043564.mRNA mRNA upstream 513814 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
TU521676 other downstream 177075 350103 ~ 350202 (-) True G454374
TU522002 other upstream 523258 1051468 ~ 1055895 (-) True G454663
TU522025 other upstream 613032 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 808069 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 898573 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 898573 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603

Expression Profile