RNA id: TCONS_00027830


Basic Information

Item Value
RNA id TCONS_00027830
length 464
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_013931
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12444943 ~ 12622855 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAAAGCCATTCTTCTGAATGAACGCGAGAGGATAAGACCGTCAAGATGAAGGGAACGTATTTACCGTAGTCGAGCAGCCGAAACTGCGTCGGAGAGTCGCGGGAATGGCATGAGACACGCGTGCACCGAGACCGCAGGCTGCTGCCGCCGTCGCCGCCGCCGCTGCTGTGGAAGTGCTCCTCAGTTCATGTGAGGGCCGCGACCGGCGGCTCTCTTCCCCCCCGTCCCGTCACTTCCCCGAGCCCCCATGCGAAACATCACGGTCCCGGACAGCAGctccagcaacaacaacaataacaacaacgcCAACTCAAATGACACATGTTCCTGCAACTGCACCCTCTCCCAGCCACAGGGAATGGATATATCTGAACTGGAGTTTGTTCAGATAATAATCATAATTGTGGTGATGACTGTAATGGTAGTTGTGATCATCTGTTTGCTAAACCACTATCGGCTGT

Function

GO:

id name namespace
GO:0060394 negative regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0010991 negative regulation of SMAD protein complex assembly biological_process
GO:0000139 Golgi membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-850 Predicted to enable R-SMAD binding activity. Predicted to be involved in negative regulation of SMAD protein complex assembly; negative regulation of pathway-restricted SMAD protein phosphorylation; and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within negative regulation of signal transduction. Predicted to be located in endosome and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and early endosome membrane. Orthologous to human LDLRAD4 (low density lipoprotein receptor class A domain containing 4).

Ensembl:

ensembl_id ENSDART00000151508

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027828 lncRNA upstream 163004 12417514 ~ 12420573 (+) True XLOC_013930
TCONS_00029877 lncRNA upstream 282686 12295450 ~ 12300891 (+) True XLOC_013928
TCONS_00027811 lncRNA upstream 1568719 11013622 ~ 11014858 (+) True XLOC_013918
TCONS_00027795 lncRNA upstream 1908971 10673830 ~ 10674606 (+) True XLOC_013910
TCONS_00027787 lncRNA upstream 2008588 10565683 ~ 10574989 (+) True XLOC_013905
TCONS_00027840 lncRNA downstream 486988 13102224 ~ 13120278 (+) True XLOC_013936
TCONS_00029698 lncRNA downstream 500029 13115265 ~ 13115526 (+) True XLOC_013937
TCONS_00029878 lncRNA downstream 615147 13230383 ~ 13249249 (+) True XLOC_013938
TCONS_00027844 lncRNA downstream 799440 13414676 ~ 13420477 (+) True XLOC_013940
TCONS_00029879 lncRNA downstream 1016089 13631325 ~ 13635810 (+) True XLOC_013942
TCONS_00027827 mRNA upstream 151589 12413683 ~ 12431988 (+) False XLOC_013930
TCONS_00027825 mRNA upstream 154323 12406583 ~ 12429254 (+) False XLOC_013930
TCONS_00027826 mRNA upstream 169794 12406638 ~ 12413783 (+) False XLOC_013930
TCONS_00027824 mRNA upstream 223456 12350069 ~ 12360121 (+) True XLOC_013929
TCONS_00027823 mRNA upstream 293436 12237945 ~ 12290141 (+) True XLOC_013927
TCONS_00027831 mRNA downstream 34455 12649691 ~ 12681815 (+) False XLOC_013932
TCONS_00027832 mRNA downstream 34524 12649760 ~ 12681730 (+) True XLOC_013932
TCONS_00027833 mRNA downstream 147651 12762887 ~ 12803408 (+) False XLOC_013933
TCONS_00027834 mRNA downstream 186704 12801940 ~ 12803074 (+) True XLOC_013933
TCONS_00027835 mRNA downstream 300262 12915498 ~ 12927089 (+) True XLOC_013934
TCONS_00027817 other upstream 1305048 11278413 ~ 11278529 (+) True XLOC_013922
TCONS_00027800 other upstream 1747956 10832092 ~ 10835621 (+) False XLOC_013912
TCONS_00027788 other upstream 2016091 10567371 ~ 10567486 (+) True XLOC_013906
TCONS_00027758 other upstream 3139699 9443772 ~ 9443878 (+) True XLOC_013889
TCONS_00027757 other upstream 3153633 9429857 ~ 9429944 (+) True XLOC_013888
TCONS_00027836 other downstream 329614 12944850 ~ 12944966 (+) True XLOC_013935
TCONS_00027847 other downstream 1218643 13833879 ~ 13833993 (+) True XLOC_013944
TCONS_00027852 other downstream 1495735 14110971 ~ 14112909 (+) True XLOC_013947
TCONS_00027859 other downstream 1779643 14394879 ~ 14398687 (+) True XLOC_013950
TCONS_00027862 other downstream 2235597 14850833 ~ 14852304 (+) True XLOC_013953

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU521790 True 632 lncRNA 0.57 2 CI01000320 556268 ~ 556919 (-)