XLOC_013942


Basic Information

Item Value
gene id XLOC_013942
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13631325 ~ 13635810 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029879
AATGTGACTAAGTTGGAGTTTATTCAGTGCATGGTGCTATATTGtacatttgtctttttttccagTGATGGCAAAAGAAAGAGGGCTGTTATGAGAAGAAAAAGATCCTCTGAGGACGAAACGTACCATTCTTGTCTATTCTTCACCCCAGATTAGCATAGGAAAGGAGTGCCACAATGAAGAAAACAACACACTGAACGAACTACAACACTTCGTTCTCTGTACAGGATACTATCTGAACTATTATAAAAGcgtaacattttaaaatagacatttaaaaactGGACGTGCTGGACTCGTCAGCTGGACAAAGGGCAGTATGAAAAGTAGAAATATACTGAAAATGAACAAAGTTATCCCTGCAAATCCCATTTAAAAACTGGCGGGAGCTGGTGTTTGGGATTCTGGATCTAATACAAAAAACATCCAAGCTGCATTTAAGAAAGCAGGGCGTCTAAAATGCAAAGTACACACACATTAACGAGAACAAAAAAGCtggaaataaatagaaatatcatAGGATGTAGTTTCACTACAATACCCCACCCGTCTTCATCAGACCCCGATCCATTGCTGACACAGGACAACATTaccaacaaacaaaagaaaaatgatTCAAGCCTTCAACAAATATGCAAAGTAATATAACTGCAAAACACAAGAAAACATCTGAAACTGCTCCAGCATTCTGAATGAAAAGAACACATTATTGATCTTACACAAAATAATACTTTCACATTTAAGAGGAACACAATATATGGGACTTTACAACAGGATGGAGCTCTGGAttaggaacagttcacccaaaaattccaACTCTGTCATGGTTTACTCACACTCCTTGCCTTTATCAAATCTACATGACTGGCTTTGCTCTGTGAAATTAAGAATGCTCATGATGCGCCTTTCCATTCAGGAAAAAGCCTGAGACTAGAGTCTAGATCCACAAATCAGCAACACAgatgtttactttaaaatggATGACTCCGCGTGATAATCCAAGTCATGTTGTAGTTTGATGTGAGGAACAAATTTAATCACTGTCTTTCATATTATTCAAATCTATGTTGATCTGTGGCAAGACTCATGAATATAAATTCTATTTGACATTATTGACATCAAACCTTTTACATTGGCATTGATGTGATTGAAAATTACATTTGAGAAAAGGGGGAAAGGAGGGGGTGGTGGGACTTAATGGGATACACGTATTTCACCCAAAATAAGTAATACCTGTCAGGATAAGTTCACTCTCACGTGACAAAAAGGaagatatttgaaaaaatgtTGGTAATGAAAAACTTCCGGTGACAATATTTACTTGAAACTCGATGAAGGAGAGTCCATCTTTCTTATTTTTTGGGGATGAAATGACCATGTATTTAAAGGTGAGTTCACACTTGACATGAACTCGCATGCGATTGGTCTGATACTGAGGTTTATTGTGTAAATTCTGTCAATTTCTGTCACACTGAAAAGATGTGAGACAGAAATTCTTCATCTATTTCAAACGAATtgataaataaactaatacaGTATATCCGTTAGCAATAATGTGTTTTACACAAGTACATAACACAATTTCACCAAAATGTGACATTCTTTTGTTACAGCTCCATACACAGGTATTATATGATACAGGTAGGATACACAGATATACTCTGTGCTCAAATTGAGGGGGGATGCGGGGGGATGGCATCCCTTAAATGGAAATAAGTGACAAAAAACATCCCTTTTGTAAAACCACCATCCCCTTTGTAAAACCACCATCCCCACATCCTCTTTAGATTAACAGCAGTGTGTGTAATGTAAAACTTATcatgcaaattaaatattaaaaatctcTATTTATGGTTATTTATAACTTATAAACTATGACGCTTGACCAATCAGATCTCAGTATTGTAATAAGGCGCAACTCACAAGCGCCATACAGTTCATTGCGTCATTGTGCACGATTTTCAAAATGTCTAAGAGAGCAGTTCAGACGGAAGAGAACAGAAGGTatgatattttattgtttatatattatatatgtatgctGTACCTGCCGTGCATAACTGCATTTCAAAACAGTTTAGGCGACTTGACGCGAGTACAACAAGCTGTTCTATATTCACTATAAAACAGTTAACAGGGCTAGCTAACATTTACTTTAGCAACCCAAGTTTCACTGTTAATATCTGAGTTACAGCAGATTCAAGGCTCCCTGTTTCTAAAATGAACCCTTACTATTATCCCTAAAATCAGAACGCAACTGATGTGATGCATTTTTAGAATCACTGTTGTCCAAATGTTGCTACGTTTTCTGGAAAATGCTTCCAAACAGCTCAGCTGCAGTACATCTTCATACCATATTTTGTTTACGAATAAATCTTGAGCTTTGATATGAGACAATGATTCAGTCGTGTATTCAGCAagacatttgtgaatgaatcaggAGTTCGAACAACTCAATTAAATGAAACATTCAGAGACAATGTCGAAGACTTGACTACATCTATTGgcggttttagttttaaatttcatgacatttttattattaattttattgtattcatGCGACATCATACCCCTTGTTAAACaatcaatttataaataaacagtaaatttatCTAAATGTTAAGGTTGTTTTCTTTGCTATCTTTGTTGTCAAGAGgaattgtattaatttaatctgattgtAAGATGTTCTTCCTgatattatttcagtttatttaaaaaggcTCGTGTAGTTTGGCCAAATAAGGtaaacaaagtgttgtaaataaaaaGGCAAATTTATATTTAGTCAATCAAACAGTTTCTGGTAGTCAAAGACTTCCATTGTCAATTAATTACCATTGTCCCTTTTTAAtttcatgagtttctttaaaaGTGACATGCTCAAGTTTGTTATGATTGTTGGttatttaaaaaagctttttcttaaattaaaaatgtatttagatttattttgttatcattgtgtgtgtgtctttgtgtgtgtgtagctacAGGACACCACCCATCCTGTTTCTTCTTGTCTTATGTTGGGCGAGAAGCATAGCACCAAAACACGTCTATGACAACTTCAGTGTTCGCACAACAGAGGAGCACATTCTGTAATGTTATGTAAGAGAAGACTTCAGATCGCACTCTGTGGAGTGGCAGAAATTTGAACAGCGTCCTGATTTGTAGCTGGGCACCATGGCCAGACACCAAAATGTGCCACCGGTGTGCATACACTAATAGAAAactatgttttgaatgattcaaaaaTGTGTGCGACCCTCTTTAGTTACAATCTTTCCCTTTCCAGTTCAATACAGCTATCAGAAGGAGATCTCATTGCAGCAGATCTCCTTAGTTATGTGTACCAGAAGAATTCCTGATACTGTTTTGCCTCTTGTACACACATGCTAAGTCGTTGGAAAAAGAATGGAAATAAGAATCATGAACATTCTGTTAAACTGTCTACATCACTAAATAATAAGTTGGAATTTTGGAGTGAACTGCCCTGAAACAAGAGTTTTAGATTATGAAATACACATCATCATCCTGTCTGAGATGTAGAATAATAAATGCAACAACGTAATATGACCTTTAATCaaccaattaaaaaataataataaattaagttaaaacaacaacaacaacaacaacaacaacaacaaaattgacACTTTAGAAAATTGTCCTTTAAATTCCCACCTCCCATTTGTTATTATGTGAACCATCCCTTTGGAATCCACCCTAAAAATATAGTATGAATTTGAGATAAAAAGCTGCTCTTGCCGCTGTTTTAGAAAACGACTTTGAAACATGGTTCAGTTCTTAATGGAATGTCTTGAAAAAAGGTGGAACAGGCAGAATTTGGGGAAAGGCTGTCCGAGGTGAGGTGTTGGGATCTGGATGAGAACTGGTCTGAGAATAGATGATGCTCAGTTTGCAGAACGAAATGCTTGAGGACTGACAGATGTTATACAGTAGGTCTACCTTAGACGAATGGGACATGTGCTGCTACAGGAAGTGTTTGTCCGTGGAGGAACTTGGTAGATACGGTGAGTTGATGAGAAAGGGCTGGACATGAGGGCTCTTGCGTTCTTGGTTTTCTTTTTCACATTCATAAACCCGACTGGTCCTGTTTTTCACCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029879 True 4138 lncRNA 0.36 2 13631325 13635810

Neighbor

gene id symbol gene type direction distance location
XLOC_013941 tmem200b coding upstream 204334 13420884 ~ 13426991 (+)
XLOC_013940 srsf4 coding upstream 210835 13410903 ~ 13420490 (+)
XLOC_013939 lrp12 coding upstream 234030 13375838 ~ 13397295 (+)
XLOC_013938 NA coding upstream 382076 13230383 ~ 13249249 (+)
XLOC_013936 rims2b coding upstream 444503 13099541 ~ 13186822 (+)
XLOC_013943 NA coding downstream 160782 13796592 ~ 13805873 (+)
XLOC_013944 BX530067.1 coding downstream 198069 13833879 ~ 13833993 (+)
XLOC_013945 tmem222b coding downstream 358753 13994563 ~ 14035892 (+)
XLOC_013946 tpbga coding downstream 423539 14059349 ~ 14061987 (+)
XLOC_013947 zgc:175136 coding downstream 473538 14109348 ~ 14112967 (+)
XLOC_013937 NA non-coding upstream 515799 13115265 ~ 13115526 (+)
XLOC_013935 AL844521.1 non-coding upstream 686359 12944850 ~ 12944966 (+)
XLOC_013928 NA non-coding upstream 1330434 12295450 ~ 12300891 (+)
XLOC_013922 CU928061.1 non-coding upstream 2352796 11278413 ~ 11278529 (+)
XLOC_013953 NA non-coding downstream 1215007 14850817 ~ 14871231 (+)
XLOC_013955 NA non-coding downstream 1390106 15025916 ~ 15027342 (+)
XLOC_013956 NA non-coding downstream 1665878 15301688 ~ 15303833 (+)

Expression


Co-expression Network