XLOC_013946 (tpbga)


Basic Information

Item Value
gene id XLOC_013946
gene name tpbga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 14059349 ~ 14061987 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027849
CAAAGAAGTCGAGCGCGCAGGAAGAAAACACATCACTGAGTGAAGTTAAGAGGGAGGAGCACGCGGGACCGGAGTCTTGGAGAGACACTTTGGATCTCCGGACGCGCACGCCAGCCTAATGAGGGCATTTATTCAGTGAAGTTGATGCTTTATTGCTGATATTTCACCATGTTTGCCCGTGGACGTTGTGCGGTTGTGTTGGGGCTGCTGTGTGCCGCCGCGGTCTCCGCTGGCGCATTGGTGTGTCCGACTGGTTGTGAATGTTCGGAAGCAGCCCTGACGGTCAAATGCGTCTCCAAAGATCTGCGGGACATACCGAGCGGCATTCCGGGTTACACCAGAAACCTCTTCATCACCGGCAACCACATCAGTCAGATCGGACCCGAGTCTTTCCAGGGGCTGGAGAATGTGACGAATTTGTCTCTGTCTAACAACAGGATCTCTGAGGTGAAGTCTCACACATTTTCCAGCTTGCGGAGCCTCAGATCGCTGGACCTCAGCAACAACCAGCTGGCTGTCATCCATCCTGAGGCATTCACTGTCCAGAGCCGTATGCTGAGGGAGCTCAACCTCAGCCGGGCTCTCTACAACCACTCATCTGTCATGGATTTAGCCACTTCTCTTCGCTGGAGCAGCTTGAGTGACCTGCTGGTGCTGGACCTGTCCAGTAATGGCCTTGTCTTCTTGCCCTCTGGCATTTTTTGCCATCTTGTCGGCCTGCGGCGCCTTCAGCTTGGCAACAACTCTATAGTGTCTATACATAACGGCACATTCACAGGACTGGATCACCTCCAGGAGCTCGATCTCACCCACAATGCCCTCAGGACCTTGCGTGAGGAGGCTCTAAAAGAGTTGGAGCAATTGCATTCGGCAAGGCTTCATTTGGCGGACAATCCGTTCACCTGCACATGTGACATTGAACCATTTGCCGCCTGGCTCAATGGCTCTCGAGGGCAAGTAGTGGACATCGAGGGCTTGACTTGTGCGTTTCCTGTCGCCTTGCACAACACATCGCTCTTGACGGTGGGCGACCTGGAGTTGGGTTGCCATAAAGCAGGAGACAGCGACAACCTTGCGCTACAGACCTCTTACGTGTTCCTGGGTCTGGTGCTGGGATTTGTTGGTCTCATGTTTCTATTTGTCCTTTACCTGAACCGCAAAGACATTAAGAAGCGGATTTACGACATGCGGGATGCATGCCGGGAAGTCTGGGAAGGGTACCACTACCGATACGAGATTGACTCAGATCCTAGATTGTCGCAAGTGTCTTCAACAGCCGATGTGTGATCAGACACAAGCTCTTCCTAAACCAAGCTCCTTATATAAACTTTTTTCTAGCACTTTACTTGAAAGGGTGTTCAGAAGACTGTCATGAAAACTTTACAATCATGACACAACACATGCCTAGAATGTAAATGAGACTTTATGGATggttatgacaactgtcattaagcgTCATTCGCtcagtcattttaaatgcaacgATGACACTGTTTAAGGTGTCTTTATCACAACTTGACATTAACAAATATATCAAGTCTGTGTTGTGACGACATTACCAAGATAACAGACCTTGTCATAAACctatcataaacatgattgttatGAAGCCAttgtttcatatattttattacaccatcattaatattttttttatgttagctACTGTGAAACTAGTTGAATTTgtcataaaaatgttattaaatgctATTAAATATTAAGGACGCTGTTATGAAAATA

Function

symbol description
tpbga Acts upstream of or within convergent extension involved in axis elongation and regulation of Wnt signaling pathway. Located in plasma membrane. Is expressed in several structures, including anterior neural keel; forebrain midbrain boundary neural rod; margin; nervous system; and neural plate. Orthologous to human TPBG (trophoblast glycoprotein).

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:2000052 positive regulation of non-canonical Wnt signaling pathway biological_process
GO:2000054 negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060829 negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030827-4 Acts upstream of or within convergent extension involved in axis elongation and regulation of Wnt signaling pathway. Located in plasma membrane. Is expressed in several structures, including anterior neural keel; forebrain midbrain boundary neural rod; margin; nervous system; and neural plate. Orthologous to human TPBG (trophoblast glycoprotein).

Ensembl:

ensembl_id ENSDARG00000099609

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027849 True 1740 mRNA 0.48 2 14059349 14061987

Neighbor

gene id symbol gene type direction distance location
XLOC_013945 tmem222b coding upstream 23457 13994563 ~ 14035892 (+)
XLOC_013944 BX530067.1 coding upstream 225356 13833879 ~ 13833993 (+)
XLOC_013943 NA coding upstream 253476 13796592 ~ 13805873 (+)
XLOC_013942 NA coding upstream 423539 13631325 ~ 13635810 (+)
XLOC_013941 tmem200b coding upstream 632358 13420884 ~ 13426991 (+)
XLOC_013947 zgc:175136 coding downstream 47361 14109348 ~ 14112967 (+)
XLOC_013948 kdf1b coding downstream 51899 14113886 ~ 14127134 (+)
XLOC_013949 nudc coding downstream 96088 14158075 ~ 14169457 (+)
XLOC_013950 arid1ab coding downstream 289573 14351560 ~ 14438821 (+)
XLOC_013951 zdhhc18b coding downstream 392319 14454306 ~ 14470811 (+)
XLOC_013938 NA non-coding upstream 810100 13230383 ~ 13249249 (+)
XLOC_013937 NA non-coding upstream 943823 13115265 ~ 13115526 (+)
XLOC_013953 NA non-coding downstream 788830 14850817 ~ 14871231 (+)
XLOC_013955 NA non-coding downstream 963929 15025916 ~ 15027342 (+)
XLOC_013956 NA non-coding downstream 1239701 15301688 ~ 15303833 (+)
XLOC_013963 snrnau11 non-coding downstream 1999839 16061826 ~ 16061961 (+)
XLOC_013965 CR385068.4 non-coding downstream 2006983 16068970 ~ 16069103 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_01392029_01394001 TPBGL coding CI01000320 null 1391973 ~ 1394253 (+)