XLOC_013941 (tmem200b)


Basic Information

Item Value
gene id XLOC_013941
gene name tmem200b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13420884 ~ 13426991 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027845
GtaattatttaaagtattttttcgtTTAACTTTTTAAGTTTCCATGTAGAAAAAAATCCACAAGATGTCGCCAACATTTAGATAAAAGAAAAGCGTGTCCAGTACTTGCTGGCTACTTTCATCTATGTGCCTGATTTTCCATGATTTCGTttcttttcttacattttacgttACAACCCGTTTGATGTAGGTAATCACTAATATATTGGGAAGATTTACTCTTCAGAACCCCAAAGGGAGAAAATGTAGCCTGTTGAATGTACGCGTTATGGGTCCTGTCTGAGTGTATTGAAAGCAAACTGAAGTCTGGCCACTCTATCGAGTCAGAAAAAGACACGACGAAGGAGGCGCTCTCCACACTTCACTGAGGGAGAACACGAAATGTGGACACTGGTTAAGGGACACACGGTGACTACTGATGATGGAGAGCCATTTACCTTATCTGCCTTTAGAAAGTCAGTTATTTTAACCCTTCAGTGTCCTCCTTTGGACAGGAAAAGCTATCATGGGAGACGCGCGGCACTTCGCACGCGTCTGGATTGATGGAGAACCGGAAAACTTCGCAGTGGACGAAGAACATCACGAACATGCGTGTCCAGCGCGGTAGAACGATGAAACGAGGACCAAATACACTGTAACAAAGACTCCCATTAGGGGCCATTTATAAACCAGCCTATGCCATGAGAACTCAGAAGTCCCGCGGCCGGACGTCAGCTACACATTCCCGACAACGATTGCCACGTTTCAGTCTTCACTCCAGGAGGAAGAAGGAAGGCGTAATCCAGGGAAAGCTGCGTATCCGTTCCATGCCAGGAGCCTTTTTGGTACTTGGGgtggtggttgttgttgttggcaCTGCACTTGCTGTGGCAGGCTACTGGCCATACAGAGCTCATCGATCATCTTTGGACACGGTAGAGGAAGGATCCTCTGGAACTGCATCAGGATGGGGATTAGGGTCCAAAGGACTGTTTTCTGCAGCAAGTCTGGTTCATAGCGAAAGGATGAAACTACTCGGACCTGTCATTATGGGAGTGGGACTTTTCATACTTATTTGTGCAAATACGGTACTCTATGAGAATCGGGACAGGGAAACTCAAATGCTTTTAGCACAGATGCGGAGCGTCATTTGCTCTGTTTCTGCAGCTGTGCCTTCGGCAGACCTCTTACAGGTGAATTCTCTCGCCAGGCACTATCAATGGGTCAGCAGTTTGCCCGCAGCCCACCTAAACATCCTCTGCTTGCAGGAAATGTCCAGTTCAGAGCCTCTACTCCAAGTGAAGAGCATGGATGAGGAGGACAGCATTCAGCAGCAGGACACAGTGCACACTGAGGTTCTTCATCATCAGGACTCCTCCTCTACCCCCTCTGTTCACTCCTCTAACTCCTGCAACAATAGCAAAGAGGTTTTATGCATGGACGAGCAGAGGACAACCTCTGCACTCGACCTGCGGCAAGAAAGTCACTTTGCACTCAGTAACTGTATGACTGCGTCCTCTATGTCCACACTGGGTGGAGAGGAGTGTGAAATCTTCCCCATCCCGCCCAGACGCTCCTATAGCATGAACCACAGGACTAAACCCCAAATACTGCCAAGGAATCTGGTCCATCCAGAGGACAAGTCTGTGTCTTCCATGGGTCATCATAGACTGCTTCCAAGACAATCCAGCTCAGAGGTGTGCATTAACATGGTTGGAGTAGACATTAAAACCCTTGACCTTATACCTGTGGAAGAGCAGAGGCACCGCAGCTGGCCTCGGCTAGACCTCGGAAGTGCAAGGAAGTATCTGAAGCTCGAGAACAAAGAGGATTCTGTGGAAAAGTTACTGGACCAGCTTGAGCAACAATGCTTACAGATGAACAAAAGCTATGGCTCAGGTCCGTTTCAGTGAGCTGAGGTTTAATCATTACATCAAGGTTAATGGATTGGCAGATCTCACGGGCATAAGGAGTAGCTTGACAAAGTGACATAAACTTGGAATAACCTAGTGGGCAAGTTTCCAATGGATGTTGTTTGCAGTTTCTGGAATCCCTTGAAGCCAACTAATTGCTCATTTCCAAGACCTAGCCATTCATCTCACTTGACTAGTTTTTTAAAAACTAGTTTGTTCTGAGATTAGTGGAGTATGGAAATTTCACTTGAAAGATTATCAACATCTGCAACAAGCTATTACACTCATGCTGTGGAATTTAAACATACGTTCTGAAGGATTTTTTGGGATGGAGGTATTTTACACGTTTGGGAAAGTGCTAGTCTATGATGTCACATTTGACTGGATGGATCTCACAGTTTATGTGTAAAAGGCCAACTGGAGGGATCAGTTTGTTTTTGTTGCTCAAGCTCTACTTGCTACTAGGATACAGTAAGCAGCATTTCTTAATCTGCAAGGTAGAATAAACGAAGACCTCAGCAGTGGCTAGATTCAAAGTAAACACATTTCTGACTTCCGAATTCAGGTCAGCCAAATGTATGGCTCCAGTTTTGATAGTTTTAAGGGCCAAAAATGGACAATGCTgattatttgaccaaaaaaaaaaaaaaagattcatcaAAGCAGTGTCTACGATTGGATTGTccattagaatttatttatatagttacAAATTATGGTAAATCAACCTCAGTTGCAATGTGTGTAAAAGTTTATGGCTTCCCTGAGTGTCTGTTATCCTCGTATCTCACCTTACTTCTATCTCTGCCTGGTGGCAGTAAAACAGATGCACTTATTATGAGGGTCCAGTGCTCTTTCGGCTTCATTAACCAAGATGATCAGTGTTTTTGCATGCACTAATGCGGGTACATAACTGCTTTCCCTTTAAAGGGTGGAGCTGGACCAAGCCCCTCCTCTTTGCAGTGAGAATGTGTAATTCACTCTGTTTACAGAAATAAGACAGTCAACCTGTCTCTATTTTGTCTGTGTAGCCTGTTTTGTTATGCTGTGTTACTTGCTGTGTGTTCTCAGTGTATAATGAGCAATATCCACAGTCTGACTGACCAATCAATGATCAGACCCTTTACCACATTTGATCTGAATTTCATGCCTGTGTTGCAAATAAAAGGCAAAAC

Function

symbol description
tmem200b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM200B (transmembrane protein 200B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-303 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM200B (transmembrane protein 200B).

Ensembl:

ensembl_id ENSDARG00000104274

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027845 True 3067 mRNA 0.44 2 13420884 13426991

Neighbor

gene id symbol gene type direction distance location
XLOC_013940 srsf4 coding upstream 394 13410903 ~ 13420490 (+)
XLOC_013939 lrp12 coding upstream 23589 13375838 ~ 13397295 (+)
XLOC_013938 NA coding upstream 171635 13230383 ~ 13249249 (+)
XLOC_013936 rims2b coding upstream 234062 13099541 ~ 13186822 (+)
XLOC_013937 NA coding upstream 305358 13115265 ~ 13115526 (+)
XLOC_013942 NA coding downstream 204334 13631325 ~ 13635810 (+)
XLOC_013943 NA coding downstream 369601 13796592 ~ 13805873 (+)
XLOC_013944 BX530067.1 coding downstream 406888 13833879 ~ 13833993 (+)
XLOC_013945 tmem222b coding downstream 567572 13994563 ~ 14035892 (+)
XLOC_013946 tpbga coding downstream 632358 14059349 ~ 14061987 (+)
XLOC_013935 AL844521.1 non-coding upstream 475918 12944850 ~ 12944966 (+)
XLOC_013928 NA non-coding upstream 1119993 12295450 ~ 12300891 (+)
XLOC_013922 CU928061.1 non-coding upstream 2142355 11278413 ~ 11278529 (+)
XLOC_013953 NA non-coding downstream 1423826 14850817 ~ 14871231 (+)
XLOC_013955 NA non-coding downstream 1598925 15025916 ~ 15027342 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_01062113_01063824 NA coding CI01000320 null 1061933 ~ 1064327 (+)