XLOC_013936 (rims2b)


Basic Information

Item Value
gene id XLOC_013936
gene name rims2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13099541 ~ 13186822 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027837
cagggtCACAGAGAATCAGTGACAGCGAGTTCTCTGATTACGACTGTGAAGATGGGATTGGTGTGATCTCAGATTACCGGCACAATGGCAGGGATTTCCAGAGCTCTACTCTGTCTGTACCAGAGCAGGTGATGTCGTCCAATCACTGTTCACGATCAGACATGATCCGCACACGCTCACGCTCCCCCAGCGTTCCTCCACCGCAGAGTCGAAGTTTAGACCATGGTGTGAGAGGAGGACCATCACATTATGGCCCCCAACATCGCTTGTCTGAAGACAGATACTCACCAGACAGGTACAGCCGCAGCATGGTGGTCAGACATGACCATTACAGGTCCAGGTCAGCCGACCAGCGGCCCATGATGGAGCGACCGGTCTACACACGCTCACGCTCATCTGAGCGTCCCGACTCCGGATACATGAGATCCATGCCATCCTTACCATCAGGGAGATCTGCACCTCCCTCTCCTGCCTTAACGAGG
>TCONS_00027838
ggtCACAGAGAATCAGTGACAGCGAGTTCTCTGATTACGACTGTGAAGATGGGATTGGTGTGATCTCAGATTACCGGCACAATGGCAGGGATTTCCAGAGCTCTACTCTGTCTGTACCAGAGCAGGTGATGTCGTCCAATCACTGTTCACGATCAGACATGATCCGCACACGCTCACGCTCCCCCAGCGTTCCTCCACCGCAGAGTCGAAGTTTAGACCATGGTGTGAGAGGAGGACCATCACATTATGGCCCCCAACATCGCTTGTCTGAAGACAGATACTCACCAGACAGTCATTATCTTACCCTCCCTCCTCGAACCAGACACAGACAGGCATCCATCGACTCCGCTGTCCAGGACCCCAGgAGGATGAGAAGAGATAGACAAATGTCTACCTACAGTGACTCATATGAATCGCCTGAGAGATATTACAATGGGCCCAATCATGTATCTACTCCATGGCCCAATCATGTCATGAACGGAACCGGTGGAGACTACAGTAGGACGTGTCCCCGGATAGAAATTGAGCCTTCTACAGATACAGAAAGAGAGGATCAAATCCCAGAGTTCCCTGCTAACCATGATCACTTTGAGGAAGATCTGAGGGCAAACCCACGCACTGGATCAGTCCAAACAAGTCCCACCAGCACGCCAATGTCCAGTCGAAGAGGTCGACAGCTACCGCAGGTCCCACCAAAGGGCTCTATGGATAGAAATGGCGAGGGCATTACTGAGCCTTACGAAGCAGTGGGAGGGGCTTCACTACATCAAGCCCCGCCCCCTCCACCACTACAAGTCCCACAAGCAGTGGCTGCAATGGGAGGGGCTGTACAACATCAAGCCCAGCCCCCTCCACCACCACAAGTCATACAGGCAGTAGCTGCAGTGGGAGGGGCTTCACAACATCAAGCCCCGCCCCCTCCACAACCACAAATCACACAAGCAGTGGCTGCTCATGTGGGAATGATGCCTCCAGTCCCGGGCCCACCTACTGCACCTGCAACTCCTCCTGCACAAGCTCCTCCCCCTCCTGCACATCCTAATCCAACTTCTTCATTAGCCTCTCCACCAACCCATGCCCAGCCTCCTCAAATGCATGCCCCTCCATCTGCAACTCCTGCCCCTACACCGACCGCTCCTCCCCCAGCTTCTGCCCTCCCTCCCCAGGCTCCTCCCCCAGCCCCTGCTGCCCAATCATCAGCTTCATCGCTCGTCCACCAGGCTTCATTATCagAATCCCAGGAAAGGCCTGTAGCTCCCCCGCCTGTCAATGGGAGGAAagAAGTGACATGGGAGGATCAGCAGAAGAAAATACCTGCATTAATGTCAGAGTCAACAGTGTCAGAGAATGGAGATGCAGGCACGTTGAAGGATCCATCGAAGCGTGGGATGGACAGCCTCTCCATGAGGTCATCGGACAGTGATGTAAGCGACGTGTCCGCTATGTCGAGTGCGTCTCGTCTTAGCAGCACGAGCTACATGTCTGTCCAGTCAGAAAGAGTGCGAGCGAGCCGCAAGATCAGTCGTGGAGAGGCACTTCAGAGTCAGGGAGAAGAGGGCACTGTTGTTGTGGAAGAGCTGGTTGAGGCATCTACAGCCAGTGTACAGAGGGCGGGGCTTGAAGGGGAGGGAGGCAGGTCTATTGAGCAtccagaggaggaggaggaagaggaggaaccTGAGAGGGCTCAGACGGCGACCCCCGGCTCCAACATCACCAAGAGCTCCAGTGTGGGTGGAGACATGTGTTCGCTGGGCAGGAacgacgacgatgatgatgacaAGAAGAGGCGCTCCAGTTTTGGAGCCAAGATGGCTGCCATGGTGGGACTGGGGAAGAAGAGTCAAAGTACCTCTCAGCTCGACCCAGAGGAGGAGGGAAAGAAGAAGAAGCCGGTGCGTCTGGCGATCCAGCGAAGCGTGGAGACAGGTCTAGCTATCGAGATGAAGAGCAGGATGACACGGCAGCCCAGCAGAGAGACCACAGATGACAGTGAAAAGCCAAAACCTGGAAATCTGATTTTCCCTGGGGTGAAGATCTCAAAGGACAGCCAGTTTACAGAGTTTCTGGATGGCCTTGGCCCAGCCCAGCTGGCAGGAAGACAAACATTAGCCACACCTCCAATGGGGGATATTCAGATTGGTATGGTGCACAGGAAAGAGAGGCTGGATGTTGAAGTTATTCGGGCTCGAGGTCTGGTGGGCAAACCAGGAAACAAACAGACTCCAGCACCTTATGTAAAAGTATATCTACTGGATAATGGGAAGTGCgtcaacaaaaagaaaacacGGACCGCCAGAAAAACACTGGATCCTCTTTATCAACAGCAGCTTCAGTTTGAGGAGAGTCCTGAAGGGAAGGTTTTACAGATCATTGTTTGGGGAGACTATGGACGCATGGACCACAAATCCTTCATGGGAGCCGCCCAGATCCTATTAGACGATTTAGAGCTGACCAACATGGTGATTGGCTGGTACAAGCTCTTCCCTCCCACCTCATTGGTGGACCCAACCTTGGCACCTTTAAGTAGTAAACCTCCAGAATCAGGTCTGGAGAGTTCCAACGTTCGGTCGTAGCGTTCGGCACGAGGAGGTGAGCGGTAGAGAGCGGCATGAGTCGGAAACCGTCCCGACGGGTCAGGTCCTGGTTACACTGCATGCTTGATGTTGTGTCCTCTGAGCCCGTGCGACATGAGGCTAAGAAAAGGCCTGCGTCCTTctgccaaaaaaacaaaacaaaaaaaacgaaaaacgaAAAGAAAACGTATGCTGCTGTCAAACGCAAGGGAAAGAACGCCACAGGAAGTCTCTCCGTTCAGCTGAAGAGATGCAGCCAGGGATTCGGTGGAGTCTGGATTCTTAACCGTAGGAAGTTAAGAGTCCACCAGAAACGGAAGACGCCGTTTTTCTCTGGCTGTTTGCTCTCTGTTGTATTCCAAGAGATGTCAGTGTTTCTTACTAAAAACGTTGTAGCCATTATTGTAAGCCAAGCTGTcaggaggaaaagagaagagaagagcgCTTGGCTGAGATGGGACAAGAAAGGAGTGACGTCCTCAGGGGAATGACCCTCCATCAAGCTTGATCTCCATCGGATCGGTCTTTAAAGTTCACGTCATGGCCAGAGTTCCTGTTCGATTCAGGAAACAACAAAAGTccggaaag
>TCONS_00027839
CGAGTTCTCTGATTACGACTGTGAAGATGGGATTGGTGTGATCTCAGATTACCGGCACAATGGCAGGGATTTCCAGAGCTCTACTCTGTCTGTACCAGAGCAGGTGATGTCGTCCAATCACTGTTCACGATCAGACATGATCCGCACACGCTCACGCTCCCCCAGCGTTCCTCCACCGCAGAGTCGAAGTTTAGACCATGGTGTGAGAGGAGGACCATCACATTATGGCCCCCAACATCGCTTGTCTGAAGACAGATACTCACCAGACAGgAGGATGAGAAGAGATAGACAAATGTCTACCTACAGTGACTCATATGAATCGCCTGAGAGATATTACAATGGGCCCAATCATGTATCTACTCCATGGCCCAATCATGTCATGAACGGAACCGGTGGAGACTACAGGGCAAACCCACGCACTGGATCAGTCCAAACAAGTCCCACCAGCACGCCAATGTCCAGTCGAAGAGGTCGACAGCTACCGCAGGTCCCACCAAAGGGCTCTATGGATAGAAGCACGTTGAAGGATCCATCGAAGCGTGGGATGGACAGCCTCTCCATGAGGTCATCGGACAGTGATGTAAGCGACGTGTCCGCTATGTCGAGTGCGTCTCGTCTTAGCAGCACGAGCTACATGTCTGTCCAGTCAGAAAGAGTGCGAGCGAGCCGCAAGATCAGG
>TCONS_00027840
ACGCTCCCCCAGCGTTCCTCCACCGCAGAGTCGAAGTTTAGACCATGGTGTGAGAGGAGGACCATCACATTATGGCCCCCAACATCGCTTGTCTGAAGACAGATACTCACCAGACAGgAGGATGAGAAGAGATAGACAAATGTCTACCTACAGTGACTCATATGAATCGCCTGAGAGGTAAAATATGAATACATTAGTTGAGACATTCTCTGTTTATACACCAATAAATGACATTCAAGTGGACTATGTTACCAGTTACAGACATAAACTCTCACCCCATTGCCTTGATTCAGCTGTTGTTCATTCTAATCATACTTTTCCTTTCTTCATTTCGATCTTCATCACTCATCATCCTCCATTTAAAGATATTACAATGGGCCCAATCATGTATCTACTCCATGGCCCAATCATGTCATGAACGGAACCGGTGGAGACTACAGGTAAGACATTTGAAGACCTTAACACCAA

Function

symbol description
rims2b Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis and regulation of exocytosis. Predicted to be located in membrane and presynaptic active zone. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Orthologous to human RIMS2 (regulating synaptic membrane exocytosis 2).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:2000300 regulation of synaptic vesicle exocytosis biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0098831 presynaptic active zone cytoplasmic component cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0048788 cytoskeleton of presynaptic active zone cellular_component
GO:0045202 synapse cellular_component
GO:0016020 membrane cellular_component
GO:0044325 ion channel binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-893 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis and regulation of exocytosis. Predicted to be located in membrane and presynaptic active zone. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Orthologous to human RIMS2 (regulating synaptic membrane exocytosis 2).

Ensembl:

ensembl_id ENSDARG00000102690

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027837 False 482 mRNA 0.55 4 13099541 13121545
TCONS_00027838 False 3164 mRNA 0.53 26 13099544 13186822
TCONS_00027839 False 679 mRNA 0.52 8 13099566 13151211
TCONS_00027840 True 468 lncRNA 0.43 3 13102224 13120278

Neighbor

gene id symbol gene type direction distance location
XLOC_013935 AL844521.1 coding upstream 154575 12944850 ~ 12944966 (+)
XLOC_013934 cthrc1a coding upstream 172452 12915498 ~ 12927089 (+)
XLOC_013933 mc5ra coding upstream 296133 12762887 ~ 12803408 (+)
XLOC_013932 rnmt coding upstream 417726 12649691 ~ 12681815 (+)
XLOC_013931 ldlrad4a coding upstream 476686 12444943 ~ 12622855 (+)
XLOC_013938 NA coding downstream 43561 13230383 ~ 13249249 (+)
XLOC_013939 lrp12 coding downstream 189016 13375838 ~ 13397295 (+)
XLOC_013940 srsf4 coding downstream 224081 13410903 ~ 13420490 (+)
XLOC_013941 tmem200b coding downstream 234062 13420884 ~ 13426991 (+)
XLOC_013942 NA coding downstream 444503 13631325 ~ 13635810 (+)
XLOC_013928 NA non-coding upstream 798650 12295450 ~ 12300891 (+)
XLOC_013922 CU928061.1 non-coding upstream 1821012 11278413 ~ 11278529 (+)
XLOC_013918 CU628002.1 non-coding upstream 2084683 11013622 ~ 11014858 (+)
XLOC_013906 CR384101.1 non-coding upstream 2532055 10567371 ~ 10567486 (+)
XLOC_013943 NA non-coding downstream 609770 13796592 ~ 13805873 (+)
XLOC_013944 BX530067.1 non-coding downstream 647057 13833879 ~ 13833993 (+)
XLOC_013953 NA non-coding downstream 1663995 14850817 ~ 14871231 (+)

Expression


Co-expression Network