Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00027859 |
| length | 475 |
| RNA type | processed_transcript |
| GC content | 0.48 |
| exon number | 3 |
| gene id | XLOC_013950 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 14351560 ~ 14438821 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0043044 | ATP-dependent chromatin remodeling | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0071565 | nBAF complex | cellular_component |
| GO:0016514 | SWI/SNF complex | cellular_component |
| GO:0035060 | brahma complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0031491 | nucleosome binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5725 | Predicted to enable DNA binding activity. Predicted to contribute to nucleosome binding activity. Predicted to be involved in ATP-dependent chromatin remodeling; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of SWI/SNF complex and nBAF complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 2; breast cancer; carcinoma (multiple); gastrointestinal system cancer (multiple); and neuroblastoma. Orthologous to human ARID1A (AT-rich interaction domain 1A). |
| ensembl_id | ENSDART00000161603 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027851 | lncRNA | upstream | 284772 | 14109501 ~ 14110107 (+) | False | XLOC_013947 |
| TCONS_00027846 | lncRNA | upstream | 589006 | 13796592 ~ 13805873 (+) | True | XLOC_013943 |
| TCONS_00029879 | lncRNA | upstream | 759069 | 13631325 ~ 13635810 (+) | True | XLOC_013942 |
| TCONS_00027844 | lncRNA | upstream | 974402 | 13414676 ~ 13420477 (+) | True | XLOC_013940 |
| TCONS_00029878 | lncRNA | upstream | 1145630 | 13230383 ~ 13249249 (+) | True | XLOC_013938 |
| TCONS_00029880 | lncRNA | downstream | 452130 | 14850817 ~ 14871231 (+) | False | XLOC_013953 |
| TCONS_00029881 | lncRNA | downstream | 627229 | 15025916 ~ 15027342 (+) | True | XLOC_013955 |
| TCONS_00029882 | lncRNA | downstream | 903001 | 15301688 ~ 15303833 (+) | True | XLOC_013956 |
| TCONS_00027868 | lncRNA | downstream | 1044694 | 15443381 ~ 15452953 (+) | False | XLOC_013957 |
| TCONS_00029883 | lncRNA | downstream | 2313139 | 16711826 ~ 16712299 (+) | False | XLOC_013967 |
| TCONS_00027855 | mRNA | upstream | 225422 | 14158075 ~ 14169457 (+) | False | XLOC_013949 |
| TCONS_00027856 | mRNA | upstream | 232649 | 14158093 ~ 14162230 (+) | True | XLOC_013949 |
| TCONS_00027853 | mRNA | upstream | 267745 | 14113886 ~ 14127134 (+) | False | XLOC_013948 |
| TCONS_00027854 | mRNA | upstream | 268680 | 14115838 ~ 14126199 (+) | True | XLOC_013948 |
| TCONS_00027850 | mRNA | upstream | 281912 | 14109348 ~ 14112967 (+) | False | XLOC_013947 |
| TCONS_00027860 | mRNA | downstream | 55619 | 14454306 ~ 14470811 (+) | True | XLOC_013951 |
| TCONS_00027861 | mRNA | downstream | 175311 | 14573998 ~ 14588414 (+) | True | XLOC_013952 |
| TCONS_00027863 | mRNA | downstream | 522313 | 14921000 ~ 14951756 (+) | True | XLOC_013954 |
| TCONS_00027864 | mRNA | downstream | 1042154 | 15440841 ~ 15473157 (+) | False | XLOC_013957 |
| TCONS_00027865 | mRNA | downstream | 1042335 | 15441022 ~ 15469187 (+) | False | XLOC_013957 |
| TCONS_00027852 | other | upstream | 281970 | 14110971 ~ 14112909 (+) | True | XLOC_013947 |
| TCONS_00027847 | other | upstream | 560886 | 13833879 ~ 13833993 (+) | True | XLOC_013944 |
| TCONS_00027836 | other | upstream | 1449913 | 12944850 ~ 12944966 (+) | True | XLOC_013935 |
| TCONS_00027817 | other | upstream | 3116350 | 11278413 ~ 11278529 (+) | True | XLOC_013922 |
| TCONS_00027800 | other | upstream | 3559258 | 10832092 ~ 10835621 (+) | False | XLOC_013912 |
| TCONS_00027862 | other | downstream | 452146 | 14850833 ~ 14852304 (+) | True | XLOC_013953 |
| TCONS_00027879 | other | downstream | 1663139 | 16061826 ~ 16061961 (+) | True | XLOC_013963 |
| TCONS_00027881 | other | downstream | 1665776 | 16064463 ~ 16084101 (+) | False | XLOC_013964 |
| TCONS_00027883 | other | downstream | 1670283 | 16068970 ~ 16069103 (+) | True | XLOC_013965 |
| TCONS_00027893 | other | downstream | 2974945 | 17373632 ~ 17373686 (+) | True | XLOC_013972 |
