RNA id: TCONS_00029883


Basic Information

Item Value
RNA id TCONS_00029883
length 313
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_013967
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 16711826 ~ 16712299 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTACACCGAAAGCGTTTGCAGCGAGCAACTGAGCAGCGTCCTTTGTGCAGAATGGAGATTGAGAAAAAGGAGAGGTTACGACGCAGAATTTGGGTGCACCTGGTCAACCAGCGAAGGAGACAATATGGTACATATtaccatcttgtggcagaattGCAACTGGATCGTGACCGCCACCGAAAATACTTCAAAATGAGCGCAGAGCAGATGGATCACATTCTTACACTGATTGGGGTGAATCTCTTAAGACAAACAACAAATTACAGGAGACCCATCGAACCCAAGAAACGTCTTGCTGTTACACTGAGGT

Function

GO:

id name namespace
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048863 stem cell differentiation biological_process
GO:0033504 floor plate development biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0048869 cellular developmental process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007418 ventral midline development biological_process
GO:0021510 spinal cord development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005634 nucleus cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027868 lncRNA upstream 1258873 15443381 ~ 15452953 (+) False XLOC_013957
TCONS_00029882 lncRNA upstream 1407993 15301688 ~ 15303833 (+) True XLOC_013956
TCONS_00029881 lncRNA upstream 1684484 15025916 ~ 15027342 (+) True XLOC_013955
TCONS_00029880 lncRNA upstream 1840595 14850817 ~ 14871231 (+) False XLOC_013953
TCONS_00027851 lncRNA upstream 2601719 14109501 ~ 14110107 (+) False XLOC_013947
TCONS_00027890 lncRNA downstream 195410 16907709 ~ 16909487 (+) True XLOC_013968
TCONS_00029884 lncRNA downstream 641341 17353640 ~ 17354668 (+) True XLOC_013970
TCONS_00027896 lncRNA downstream 673288 17385587 ~ 17386890 (+) False XLOC_013973
TCONS_00027901 lncRNA downstream 689693 17401992 ~ 17404100 (+) False XLOC_013974
TCONS_00027902 lncRNA downstream 690939 17403238 ~ 17404100 (+) True XLOC_013974
TCONS_00027887 mRNA upstream 54263 16222618 ~ 16657563 (+) False XLOC_013966
TCONS_00027886 mRNA upstream 54263 16222618 ~ 16657563 (+) False XLOC_013966
TCONS_00027885 mRNA upstream 54263 16222618 ~ 16657563 (+) False XLOC_013966
TCONS_00027884 mRNA upstream 56677 16222618 ~ 16655149 (+) False XLOC_013966
TCONS_00027888 mRNA upstream 78364 16595332 ~ 16633462 (+) True XLOC_013966
TCONS_00027891 mRNA downstream 547613 17259912 ~ 17277208 (+) True XLOC_013969
TCONS_00027892 mRNA downstream 646551 17358850 ~ 17376041 (+) True XLOC_013971
TCONS_00027894 mRNA downstream 673262 17385561 ~ 17393384 (+) False XLOC_013973
TCONS_00027895 mRNA downstream 673270 17385569 ~ 17393195 (+) False XLOC_013973
TCONS_00027897 mRNA downstream 673330 17385629 ~ 17393194 (+) False XLOC_013973
TCONS_00027881 other upstream 627725 16064463 ~ 16084101 (+) False XLOC_013964
TCONS_00027883 other upstream 642723 16068970 ~ 16069103 (+) True XLOC_013965
TCONS_00027879 other upstream 649865 16061826 ~ 16061961 (+) True XLOC_013963
TCONS_00027862 other upstream 1859522 14850833 ~ 14852304 (+) True XLOC_013953
TCONS_00027859 other upstream 2313139 14394879 ~ 14398687 (+) True XLOC_013950
TCONS_00027893 other downstream 661333 17373632 ~ 17373686 (+) True XLOC_013972
TCONS_00027899 other downstream 687964 17400263 ~ 17403895 (+) False XLOC_013974
TCONS_00027924 other downstream 2552460 19264759 ~ 19264881 (+) True XLOC_013994
TCONS_00027938 other downstream 3035320 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027941 other downstream 3042651 19754950 ~ 19768673 (+) False XLOC_014002

Expression Profile

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