RNA id: TCONS_00027892


Basic Information

Item Value
RNA id TCONS_00027892
length 1204
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_013971
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 17358850 ~ 17376041 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCGTTTCCTACTTAGGATTAATCTCGTGTATTTGATCGCGTGTGTAACGTTACGGATTCGATCAGACTCAGCGTTACGTTTGCGTGGATTAAAACACAAGAGATGGATATACGTCTGATTATTTTGAGGTGTTTTAACCGATATTTCGAGCTATAAATGCGGAGTGATCGCACCCACGGTATCGCAGTGTTGTTAATCCAGTGTTAAAGGTCAAACACGCGCCAGTAGTTGATACATCGACACGATCGGGATGTCGGATGAGGACTCGCGTGCAAGCTCTAGCtcatcttcctcttcctcctcctcctccacccatCAGCAGCAGGAGAAAGACACAcctggaaaaaagaaagaaagcaaagCCAACATGAGCAAGACATCCAAACTCCTCTCCACAAGTGCAAAGAGGATTCAGAAAGAGCTGGCTGACATCATGTTGGATCCCCCACCTAACTGCAGTGCTGGTCCAAAAGGAGACAACATCTACGAATGGAGGTCCACTATCCTGGGTCCTCCAGGTTCAGTGTATGAGGGAGGAGTGTTTTTTCTTGACATCGCTTTCACACCAGACTATCCCTTCAAACCACCCAAGGTGACGTTTCGCACAAGAATCTATCATTGCAACATCAATAGTCAGGGTGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGTCCAGCGCTCACTATCTCCAAAGTGCTACTGTCTATCTGCTCTCTGCTCACAGACTGTAACCCTGCTGATCCTCTGGTAGGAAGCATCGCCACGCAGTACACAACCAACAGACCAGAACACGACAGGATAGCCAAACAGTGGACCAAACGTTACGCCACATAATTTTCTCCGACTGCAGAGTGCTGCTTGTCGGACATCTGTGGGAAGGGGTGGCGAGTCTAAAAGAGGAACTGGTGTGAAGGGGATCCATAGGGTAGAAGATACAGGGGGGTTTTATGATGGAGtttcaattttgttttttttttgttttttgggagtATTTTTTGTTGATTGTTTCCTTCAGCTTTAGTAGCATCACGATTTAACAAAAAATGGATCTTAATGTGTGTTTTCTTTGCCGCCTTGTTGTAAATTGATCTTATTTGAAGCTTTTTCATCCTTGTCAATTGAAGTCTCAGCATGAGCCTATGGCACAGTTGTTTCATGTATGTATTTTCCCCACCAATATTAAAGCTGAAGTTGGAGT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-16 Orthologous to human UBE2E1 (ubiquitin conjugating enzyme E2 E1).

Ensembl:

ensembl_id ENSDART00000123519

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029884 lncRNA upstream 4182 17353640 ~ 17354668 (+) True XLOC_013970
TCONS_00027890 lncRNA upstream 449363 16907709 ~ 16909487 (+) True XLOC_013968
TCONS_00029883 lncRNA upstream 646551 16711826 ~ 16712299 (+) False XLOC_013967
TCONS_00027889 lncRNA upstream 646551 16711834 ~ 16712299 (+) True XLOC_013967
TCONS_00027868 lncRNA upstream 1905897 15443381 ~ 15452953 (+) False XLOC_013957
TCONS_00027896 lncRNA downstream 9546 17385587 ~ 17386890 (+) False XLOC_013973
TCONS_00027901 lncRNA downstream 25951 17401992 ~ 17404100 (+) False XLOC_013974
TCONS_00027902 lncRNA downstream 27197 17403238 ~ 17404100 (+) True XLOC_013974
TCONS_00029699 lncRNA downstream 470627 17846668 ~ 17846933 (+) True XLOC_013976
TCONS_00029885 lncRNA downstream 786801 18162842 ~ 18173519 (+) True XLOC_013977
TCONS_00027891 mRNA upstream 81642 17259912 ~ 17277208 (+) True XLOC_013969
TCONS_00027887 mRNA upstream 701287 16222618 ~ 16657563 (+) False XLOC_013966
TCONS_00027886 mRNA upstream 701287 16222618 ~ 16657563 (+) False XLOC_013966
TCONS_00027885 mRNA upstream 701287 16222618 ~ 16657563 (+) False XLOC_013966
TCONS_00027884 mRNA upstream 703701 16222618 ~ 16655149 (+) False XLOC_013966
TCONS_00027894 mRNA downstream 9520 17385561 ~ 17393384 (+) False XLOC_013973
TCONS_00027895 mRNA downstream 9528 17385569 ~ 17393195 (+) False XLOC_013973
TCONS_00027897 mRNA downstream 9588 17385629 ~ 17393194 (+) False XLOC_013973
TCONS_00027898 mRNA downstream 10352 17386393 ~ 17395587 (+) True XLOC_013973
TCONS_00027900 mRNA downstream 24242 17400283 ~ 17407115 (+) False XLOC_013974
TCONS_00027881 other upstream 1274749 16064463 ~ 16084101 (+) False XLOC_013964
TCONS_00027883 other upstream 1289747 16068970 ~ 16069103 (+) True XLOC_013965
TCONS_00027879 other upstream 1296889 16061826 ~ 16061961 (+) True XLOC_013963
TCONS_00027862 other upstream 2506546 14850833 ~ 14852304 (+) True XLOC_013953
TCONS_00027859 other upstream 2960163 14394879 ~ 14398687 (+) True XLOC_013950
TCONS_00027899 other downstream 24222 17400263 ~ 17403895 (+) False XLOC_013974
TCONS_00027924 other downstream 1888718 19264759 ~ 19264881 (+) True XLOC_013994
TCONS_00027938 other downstream 2371578 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027941 other downstream 2378909 19754950 ~ 19768673 (+) False XLOC_014002
TCONS_00027942 other downstream 2380136 19756177 ~ 19760904 (+) False XLOC_014002

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000320_03616557_03637085.mRNA True 2364 mRNA 0.39 6 CI01000320 3615842 ~ 3638047 (+)