Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00027800 |
| length | 919 |
| RNA type | processed_transcript |
| GC content | 0.48 |
| exon number | 6 |
| gene id | XLOC_013912 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 10831362 ~ 10845087 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030150 | protein import into mitochondrial matrix | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0005742 | mitochondrial outer membrane translocase complex | cellular_component |
| GO:0005741 | mitochondrial outer membrane | cellular_component |
| GO:0008320 | protein transmembrane transporter activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2319 | Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport and transmembrane transport. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Is expressed in several structures, including head; immature eye; liver; midbrain; and pectoral fin bud. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human TOMM40 (translocase of outer mitochondrial membrane 40). |
| ensembl_id | ENSDART00000151487 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027795 | lncRNA | upstream | 157486 | 10673830 ~ 10674606 (+) | True | XLOC_013910 |
| TCONS_00027787 | lncRNA | upstream | 257103 | 10565683 ~ 10574989 (+) | True | XLOC_013905 |
| TCONS_00029876 | lncRNA | upstream | 965370 | 9838182 ~ 9866722 (+) | True | XLOC_013895 |
| TCONS_00027766 | lncRNA | upstream | 1075076 | 9751075 ~ 9757016 (+) | True | XLOC_013893 |
| TCONS_00027762 | lncRNA | upstream | 1248563 | 9533277 ~ 9583529 (+) | False | XLOC_013891 |
| TCONS_00027811 | lncRNA | downstream | 178001 | 11013622 ~ 11014858 (+) | True | XLOC_013918 |
| TCONS_00029877 | lncRNA | downstream | 1459829 | 12295450 ~ 12300891 (+) | True | XLOC_013928 |
| TCONS_00027828 | lncRNA | downstream | 1581893 | 12417514 ~ 12420573 (+) | True | XLOC_013930 |
| TCONS_00027840 | lncRNA | downstream | 2266603 | 13102224 ~ 13120278 (+) | True | XLOC_013936 |
| TCONS_00029698 | lncRNA | downstream | 2279644 | 13115265 ~ 13115526 (+) | True | XLOC_013937 |
| TCONS_00027797 | mRNA | upstream | 5377 | 10794105 ~ 10826715 (+) | False | XLOC_013911 |
| TCONS_00027798 | mRNA | upstream | 5622 | 10799929 ~ 10826470 (+) | True | XLOC_013911 |
| TCONS_00027796 | mRNA | upstream | 18293 | 10794072 ~ 10813799 (+) | False | XLOC_013911 |
| TCONS_00027793 | mRNA | upstream | 145379 | 10661520 ~ 10686713 (+) | False | XLOC_013910 |
| TCONS_00027794 | mRNA | upstream | 146440 | 10661547 ~ 10685652 (+) | False | XLOC_013910 |
| TCONS_00027802 | mRNA | downstream | 10332 | 10845953 ~ 10850834 (+) | False | XLOC_013913 |
| TCONS_00027803 | mRNA | downstream | 10561 | 10846182 ~ 10850834 (+) | False | XLOC_013913 |
| TCONS_00027804 | mRNA | downstream | 11497 | 10847118 ~ 10850716 (+) | True | XLOC_013913 |
| TCONS_00027805 | mRNA | downstream | 19537 | 10855158 ~ 10859694 (+) | False | XLOC_013914 |
| TCONS_00027806 | mRNA | downstream | 19670 | 10855291 ~ 10856175 (+) | True | XLOC_013914 |
| TCONS_00027788 | other | upstream | 264606 | 10567371 ~ 10567486 (+) | True | XLOC_013906 |
| TCONS_00027758 | other | upstream | 1388214 | 9443772 ~ 9443878 (+) | True | XLOC_013889 |
| TCONS_00027757 | other | upstream | 1402148 | 9429857 ~ 9429944 (+) | True | XLOC_013888 |
| TCONS_00027739 | other | upstream | 1662867 | 9150094 ~ 9169225 (+) | False | XLOC_013879 |
| TCONS_00027731 | other | upstream | 1735732 | 9091871 ~ 9096360 (+) | False | XLOC_013877 |
| TCONS_00027817 | other | downstream | 442792 | 11278413 ~ 11278529 (+) | True | XLOC_013922 |
| TCONS_00027836 | other | downstream | 2109229 | 12944850 ~ 12944966 (+) | True | XLOC_013935 |
| TCONS_00027847 | other | downstream | 2998258 | 13833879 ~ 13833993 (+) | True | XLOC_013944 |
| TCONS_00027852 | other | downstream | 3275350 | 14110971 ~ 14112909 (+) | True | XLOC_013947 |
| TCONS_00027859 | other | downstream | 3559258 | 14394879 ~ 14398687 (+) | True | XLOC_013950 |
