Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00027804 |
| length | 708 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 2 |
| gene id | XLOC_013913 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 10845953 ~ 10850834 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042157 | lipoprotein metabolic process | biological_process |
| GO:0006869 | lipid transport | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050417-469 | Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in intestine; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4). |
| ensembl_id | ENSDART00000189784 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027795 | lncRNA | upstream | 172512 | 10673830 ~ 10674606 (+) | True | XLOC_013910 |
| TCONS_00027787 | lncRNA | upstream | 272129 | 10565683 ~ 10574989 (+) | True | XLOC_013905 |
| TCONS_00029876 | lncRNA | upstream | 980396 | 9838182 ~ 9866722 (+) | True | XLOC_013895 |
| TCONS_00027766 | lncRNA | upstream | 1090102 | 9751075 ~ 9757016 (+) | True | XLOC_013893 |
| TCONS_00027762 | lncRNA | upstream | 1263589 | 9533277 ~ 9583529 (+) | False | XLOC_013891 |
| TCONS_00027811 | lncRNA | downstream | 162906 | 11013622 ~ 11014858 (+) | True | XLOC_013918 |
| TCONS_00029877 | lncRNA | downstream | 1444734 | 12295450 ~ 12300891 (+) | True | XLOC_013928 |
| TCONS_00027828 | lncRNA | downstream | 1566798 | 12417514 ~ 12420573 (+) | True | XLOC_013930 |
| TCONS_00027840 | lncRNA | downstream | 2251508 | 13102224 ~ 13120278 (+) | True | XLOC_013936 |
| TCONS_00029698 | lncRNA | downstream | 2264549 | 13115265 ~ 13115526 (+) | True | XLOC_013937 |
| TCONS_00027801 | mRNA | upstream | 2031 | 10832092 ~ 10845087 (+) | True | XLOC_013912 |
| TCONS_00027799 | mRNA | upstream | 5203 | 10831362 ~ 10841915 (+) | False | XLOC_013912 |
| TCONS_00027797 | mRNA | upstream | 20403 | 10794105 ~ 10826715 (+) | False | XLOC_013911 |
| TCONS_00027798 | mRNA | upstream | 20648 | 10799929 ~ 10826470 (+) | True | XLOC_013911 |
| TCONS_00027796 | mRNA | upstream | 33319 | 10794072 ~ 10813799 (+) | False | XLOC_013911 |
| TCONS_00027805 | mRNA | downstream | 4442 | 10855158 ~ 10859694 (+) | False | XLOC_013914 |
| TCONS_00027806 | mRNA | downstream | 4575 | 10855291 ~ 10856175 (+) | True | XLOC_013914 |
| TCONS_00027807 | mRNA | downstream | 9769 | 10860485 ~ 10872469 (+) | False | XLOC_013915 |
| TCONS_00027808 | mRNA | downstream | 12404 | 10863120 ~ 10870932 (+) | True | XLOC_013915 |
| TCONS_00027809 | mRNA | downstream | 87216 | 10937932 ~ 10950839 (+) | True | XLOC_013916 |
| TCONS_00027800 | other | upstream | 11497 | 10832092 ~ 10835621 (+) | False | XLOC_013912 |
| TCONS_00027788 | other | upstream | 279632 | 10567371 ~ 10567486 (+) | True | XLOC_013906 |
| TCONS_00027758 | other | upstream | 1403240 | 9443772 ~ 9443878 (+) | True | XLOC_013889 |
| TCONS_00027757 | other | upstream | 1417174 | 9429857 ~ 9429944 (+) | True | XLOC_013888 |
| TCONS_00027739 | other | upstream | 1677893 | 9150094 ~ 9169225 (+) | False | XLOC_013879 |
| TCONS_00027817 | other | downstream | 427697 | 11278413 ~ 11278529 (+) | True | XLOC_013922 |
| TCONS_00027836 | other | downstream | 2094134 | 12944850 ~ 12944966 (+) | True | XLOC_013935 |
| TCONS_00027847 | other | downstream | 2983163 | 13833879 ~ 13833993 (+) | True | XLOC_013944 |
| TCONS_00027852 | other | downstream | 3260255 | 14110971 ~ 14112909 (+) | True | XLOC_013947 |
| TCONS_00027859 | other | downstream | 3544163 | 14394879 ~ 14398687 (+) | True | XLOC_013950 |
