RNA id: TCONS_00027833


Basic Information

Item Value
RNA id TCONS_00027833
length 1626
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_013933
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12762887 ~ 12803408 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATCTGATGCAGCAGAGACCCCGCTCTTCATGGAGATCTTCAAACACCCTCCTCCAGCGCGAATAAACGCCTCTGGACTGAAGGAAACACACTGTTTAAGATTCAGTACAGACAACTCCTGCTCCAAACAAGTTAAAGATGCCCTACCTACCAAACCAGTGACCCCCAGAAAAGCCTACAGCCTTCCTATTCAACTGCTTGTCTACAATGAACACTTCTGAGACCACCCTGCCCTTCTGGGGCATGCATGTCAACTCCAGTCCTGCTTCATACATCCTGAACGCCACTGAGACCCCATCCCACAACAAGCCGAAAGCATGCGAGCAGCTCAACATCGCCACAGAGGTTTTCCTCATCCTTGGCATCGTCAGTCTGCTGGAAAACATCTTGGTCATCTGCGccatagtaaaaaacaaaaacctacACTCGCCCATGTATTTCTTCGTCTGCAGTCTGGCAGTAGCCGACATGTTGGTGAGCGTCTCCAACGCGTGGGAAACCATAGTCATCTACCTGCTCACCAATCGCCAGCTTGTGGTGGAAGACCATTTCATCAGACAGATGGACAACGTGTTTGACTCAATGATCTGCATCTCTGTGGTGGCGTCCATGTGTAGTCTCCTTGCTATAGCTGTCGATCGCTATGTCACAATTTTTTATGCTTTGCGATACCACAATATCATGACGGTGCGTCGAGCTGCGCTCATCATCGGAGGGATTTGGACCTTCTGTACTGGATGTGGAATCGTCTTCATAATCTACTCCGACAATACATCCGTCATTGTGTGTTTGGTCTCCATGTTCTTCATCATGTTAGCGCTCATGGCCTCCCTTTACAGCCACATGTTCATGCTGGCACGTTCTCACGTCAAACGCATTGCTGCTCTGCCAGGCTACAACTCCATCCACCAGAGAGCCAGCATGAAAGCAGCCGTCACCCTGACTATCCTTCTGGGAATCTTCATCGTCTGCTGGGCTCCCTTTTTCCTCCATCTCATCCTCATGATTTCCTGTCCCAGAAACCTTTATTGCATGTGCTTCATGTCTCACTTCAACATGTACCTCATCCTCATCATGTGCAATTCCGTCATCGACCCACTCATTTACGCTTTCCGGAGTCAGGAAATGCGGAAAACGCTCAAGGAAATCATCTGCTGCTATAGTCTGAGAAACGTCTTTGGAATGTCTAGGTAACGACAGACTTAAGAAATAACTGGATTATCACTTCAAAACTTTCCGTCTTAAAGTTTCTCTTGATTTAGATGGATATGATCGGTGGATTTTATGCATGTATGGATGGATTTAGATGGATTGGAActcatacaatgtaaaaaaatatgatcCTCTGTCAGGCAAATTCTAGAACTTGGAACTCTTCAATAAACAAAGATGCAGAATAATGCATAATGATGAGACATTTGCTGGAGAATTAAGAAGGCCTTAGTAATCATCGAACATTATAATCTTTGACAGACAATGTGATTTAATATCACAATCTCCAGGGAAACGGAAGAGCTGTTGATCAAAGCCTGTGGGGAAATCAAGTGCAATCATTCTCAAATTAACTGTGCAAAACACAGCCTGTCGTTGACATTTATGTTGTACAGGTGACATGAAACTGTAAT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004977 melanocortin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021223-3 Enables protein heterodimerization activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human MC5R (melanocortin 5 receptor).

Ensembl:

ensembl_id ENSDART00000139909

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027828 lncRNA upstream 342314 12417514 ~ 12420573 (+) True XLOC_013930
TCONS_00029877 lncRNA upstream 461996 12295450 ~ 12300891 (+) True XLOC_013928
TCONS_00027811 lncRNA upstream 1748029 11013622 ~ 11014858 (+) True XLOC_013918
TCONS_00027795 lncRNA upstream 2088281 10673830 ~ 10674606 (+) True XLOC_013910
TCONS_00027787 lncRNA upstream 2187898 10565683 ~ 10574989 (+) True XLOC_013905
TCONS_00027840 lncRNA downstream 298816 13102224 ~ 13120278 (+) True XLOC_013936
TCONS_00029698 lncRNA downstream 311857 13115265 ~ 13115526 (+) True XLOC_013937
TCONS_00029878 lncRNA downstream 426975 13230383 ~ 13249249 (+) True XLOC_013938
TCONS_00027844 lncRNA downstream 611268 13414676 ~ 13420477 (+) True XLOC_013940
TCONS_00029879 lncRNA downstream 827917 13631325 ~ 13635810 (+) True XLOC_013942
TCONS_00027831 mRNA upstream 81072 12649691 ~ 12681815 (+) False XLOC_013932
TCONS_00027832 mRNA upstream 81157 12649760 ~ 12681730 (+) True XLOC_013932
TCONS_00027829 mRNA upstream 140032 12444943 ~ 12622855 (+) False XLOC_013931
TCONS_00027830 mRNA upstream 147651 12583577 ~ 12615236 (+) True XLOC_013931
TCONS_00027827 mRNA upstream 330899 12413683 ~ 12431988 (+) False XLOC_013930
TCONS_00027835 mRNA downstream 112090 12915498 ~ 12927089 (+) True XLOC_013934
TCONS_00027837 mRNA downstream 296133 13099541 ~ 13121545 (+) False XLOC_013936
TCONS_00027838 mRNA downstream 296136 13099544 ~ 13186822 (+) False XLOC_013936
TCONS_00027839 mRNA downstream 296158 13099566 ~ 13151211 (+) False XLOC_013936
TCONS_00027841 mRNA downstream 572430 13375838 ~ 13397295 (+) True XLOC_013939
TCONS_00027817 other upstream 1484358 11278413 ~ 11278529 (+) True XLOC_013922
TCONS_00027800 other upstream 1927266 10832092 ~ 10835621 (+) False XLOC_013912
TCONS_00027788 other upstream 2195401 10567371 ~ 10567486 (+) True XLOC_013906
TCONS_00027758 other upstream 3319009 9443772 ~ 9443878 (+) True XLOC_013889
TCONS_00027757 other upstream 3332943 9429857 ~ 9429944 (+) True XLOC_013888
TCONS_00027836 other downstream 141442 12944850 ~ 12944966 (+) True XLOC_013935
TCONS_00027847 other downstream 1030471 13833879 ~ 13833993 (+) True XLOC_013944
TCONS_00027852 other downstream 1307563 14110971 ~ 14112909 (+) True XLOC_013947
TCONS_00027859 other downstream 1591471 14394879 ~ 14398687 (+) True XLOC_013950
TCONS_00027862 other downstream 2047425 14850833 ~ 14852304 (+) True XLOC_013953

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000320_00672652_00673710.mRNA True 2123 mRNA 0.41 1 CI01000320 672652 ~ 674774 (+)