XLOC_014629 (ncaldb)


Basic Information

Item Value
gene id XLOC_014629
gene name ncaldb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12297100 ~ 12324514 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028917
GTGTTTCGTTGGAGCTGCTGGTTGCATCAAAGCTTGTTCCTGATACCTGTGGCTGCAAATCAACACCGAGGCAACCAAACGCCTCTTCCCTGTGGAGCTCCCCGGGTTATGGCCATCTAAAATCTCACGGCACAACAACACAACAACCACCTGAGCTGAATCCAGAGCATCGACAtgggaaaacaaaacagcaagcTCCGTCCCGAGGTGATCCAGGATCTGCTGGACAACACAGATTTCACAGAGCATGAGATCTTGGAGTGGTATAAGGGTTTTCTGCGGGACTGTCCCAGCGGGGCGCTCAGCATGGACGAGTTCAAGAAGATCTACGGCAACTTCTTCCCCTATGGAGACGCATCAAAGTTCGCAGAGCATGTCTTCCGGACCTTCGACGCCAATGGAGATGGGACAATAGATTTCAGAGAGTTCATCATTGCGCTGAGTGTAACATCACGTGGCCGCTTGGATCAGAAGCTTAAATGGGCCTTCAGCATGTACGATCTAGACGGCAACGGATACATCAGCAAGGCGGAGATGCTGGAGATTGTGcaggccatctacaaGATGGTATCTTCTGTGATGAAAATGCCAGAGGACGAGTCCACACCTGAGAAGCGCACAGACAAGATCTTCCGTCAGATGGACACAAATCGTGATGGTAAGCTGTCACTCGAAGAGTTTGTAGAGGGTGCAAAGAACGACCCATCCATCGTGCGACTTTTGCAGTGTGACCCCAGCAGCGCCGGCCAGTGAATCAACAGCAGTCTCCCAACAGTCATAACCTCTCGTACACAAAATCGTTCCGTCCCATCTCCTTTTGAACATCAACAGAGCCTGGACTCCAAAACTACACCCCTCAGTGTCTGAGGATTTCACACTGAAcaccatgtttgtttttttagggtCACTGAGATTGTGGACACTGAGATGTGTCTCTCTTTACTTTAAATAACTCATATAAGGCTTTTTTTTGTTGCTAAAAACACAAAAGGCAGTGATGTAATTGGCATCACTTGTTCATTTTTGGTATTGAAATTAACCCTTAAAAAGGGCTCGAAATATAAACAGAGGTTGCCTGAGATGGAGCTGAAGCGAAAATTTTCCAAGCACGCAAAAATGCACAGAACGATAAAGTAAACACTTTGTCAAAAATCATagcttatttaataattaatatttttaagagTTTACTAAATTAAGTCATTTTACACATATATTAACAAATATCATTCCTAAGGGTTCCTAGTGTTTCAATTACATTCagcacatacatttatttatgagaAGCACTTGGgcgtttttttttacttgaagtgTTTTTCCAACATTTATTGCATTATGTCAGAAAGCCTGTGCTAGATATTCTTAAAGGGGTATATTTTGTCATGATGGTGCTCCTTTTATGAGCATCcgtataatctttaaaataaaaataaaaatacactttttttaaactttaatattCGCTGCATACTGTAGGACTGACTAACCGTATAGTTGGACGATATCATTAAGCAAAGAACTATTTTCATAGGGACAAATATAATATCAATCCTgctgcttcaaaaaaaaaaaagagagaaaacatgAAAAAGTATTAGGGGAAAATGTAGATATAATTTATGGTCCAGTGATACAAATGtatcacaacacaaaaaaaagacgttttcttttatttcaaataatccTTTGTACAGTAAAAGCCAATA
>TCONS_00028918
GTTGATAGAGAGAGGGAAGAAAAGAGGAAAGAAAGCTGGCGACTACACGAGGTCCAACAGGTGAAATCGAATCACATCATCTACGCGGAGCTGAATCCAGAGCATCGACAtgggaaaacaaaacagcaagcTCCGTCCCGAGGTGATCCAGGATCTGCTGGACAACACAGATTTCACAGAGCATGAGATCTTGGAGTGGTATAAGGGTTTTCTGCGGGACTGTCCCAGCGGGGCGCTCAGCATGGACGAGTTCAAGAAGATCTACGGCAACTTCTTCCCCTATGGAGACGCATCAAAGTTCGCAGAGCATGTCTTCCGGACCTTCGACGCCAATGGAGATGGGACAATAGATTTCAGAGAGTTCATCATTGCGCTGAGTGTAACATCACGTGGCCGCTTGGATCAGAAGCTTAAATGGGCCTTCAGCATGTACGATCTAGACGGCAACGGATACATCAGCAAGGCGGAGATGCTGGAGATTGTGcaggccatctacaaGATGGTATCTTCTGTGATGAAAATGCCAGAGGACGAGTCCACACCTGAGAAGCGCACAGACAAGATCTTCCGTCAGATGGACACAAATCGTGATGGTAAGCTGTCACTCGAAGAGTTTGTAGAGGGTGCAAAGAACGACCCATCCATCGTGCGACTTTTGCAGTGTGACCCCAGCAGCGCCGGCCAGTGAATCAACAGCAGTCTCCCAACAGTCATAACCTCTCGTACACAAAATCGTTCCGTCCCATCTCCTTTTGAACATCAACAGAGCCTGGACTCCAAAACTACACCCCTCAGTGTCTGAGGATTTCACACTGAAcaccatgtttgtttttttagggtCACTGAGATTGTGGACACTGAGATGTGTCTCTCTTTACTTTAAATAACTCATATAAGGCTTTTTTTTGTTGCTAAAAACACAAAAGGCAGTGATGTAATTGGCATCACTTGTTCATTTTTGGTATTGAAATTAACCCTTAAAAAGGGCTCGAAATATAAACAGAGGTTGCCTGAGATGGAGCTGAAGCGAAAATTTTCCAAGCACGCAAAAATGCACAGAACGATAAAGTAAACACTTTGTCAAAAATCATagcttatttaataattaatatttttaagagTTTACTAAATTAAGTCATTTTACACATATATTAACAAATATCATTCCTAAGGGTTCCTAGTGTTTCAATTACATTCagcacatacatttatttatgagaAGCACTTGGgcgtttttttttacttgaagtgTTTTTCCAACATTTATTGCATTATGTCAGAAAGCCTGTGCTAGATATTCTTAAAGGGGTATATTTTGTCATGATGGTGCTCCTTTTATGAGCATCcgtataatctttaaaataaaaataaaaatacactttttttaaactttaatattCGCTGCATACTGTAGGACTGACTAACCGTATAGTTGGACGATATCATTAAGCAAAGAACTATTTTCATAGGGACAAATATAATATCAATCCTgctgcttcaaaaaaaaaaaa
>TCONS_00028919
ggtttggatctacttgaggCTGAATCCAGAGCATCGACAtgggaaaacaaaacagcaagcTCCGTCCCGAGGTGATCCAGGATCTGCTGGACAACACAGATTTCACAGAGCATGAGATCTTGGAGTGGTATAAGGGTTTTCTGCGGGACTGTCCCAGCGGGGCGCTCAGCATGGACGAGTTCAAGAAGATCTACGGCAACTTCTTCCCCTATGGAGACGCATCAAAGTTCGCAGAGCATGTCTTCCGGACCTTCGACGCCAATGGAGATGGGACAATAGATTTCAGAGAGTTCATCATTGCGCTGAGTGTAACATCACGTGGCCGCTTGGATCAGAAGCTTAAATGGGCCTTCAGCATGTACGATCTAGACGGCAACGGATACATCAGCAAGGCGGAGATGCTGGAGATTGTGcaggccatctacaaGATGGTATCTTCTGTGATGAAAATGCCAGAGGACGAGTCCACACCTGAGAAGCGCACAGACAAGATCTTCCGTCAGATGGACACAAATCGTGATGGTAAGCTGTCACTCGAAGAGTTTGTAGAGGGTGCAAAGAACGACCCATCCATCGTGCGACTTTTGCAGTGTGACCCCAGCAGCGCCGGCCAGTGAATCAACAGCAGTCTCCCAACAGTCATAACCTCTCGTACACAAAATCGTTCCGTCCCATCTCCTTTTGAACATCAACAGAGCCTGGACTCCAAAACTACACCCCTCAGTGTCTGAGGATTTCACACTGAAcaccatgtttgtttttttagggtCACTGAGATTGTGGACACTGAGATGTGTCTCTCTTTACTTTAAATAACTCATATAAGGCTTTTTTTTGTTGCTAAAAACACAAAAGGCAGTGATGTAATTGGCATCACTTGTTCATTTTTGGTATTGAAATTAACCCTTAAAAAGGGCTCGAAATATAAACAGAGGTTGCCTGA

Function

symbol description
ncaldb Predicted to enable calcium ion binding activity. Acts upstream of or within regulation of axon extension involved in axon guidance. Is expressed in eye. Orthologous to human NCALD (neurocalcin delta).

GO:

id name namespace
GO:0048841 regulation of axon extension involved in axon guidance biological_process
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-37 Predicted to enable calcium ion binding activity. Acts upstream of or within regulation of axon extension involved in axon guidance. Is expressed in eye. Orthologous to human NCALD (neurocalcin delta).

Ensembl:

ensembl_id ENSDARG00000011334

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028917 False 1709 mRNA 0.41 4 12297100 12324514
TCONS_00028918 False 1511 mRNA 0.41 4 12297233 12322356
TCONS_00028919 True 943 mRNA 0.47 4 12297730 12315693

Neighbor

gene id symbol gene type direction distance location
XLOC_014628 znf706 coding downstream 84304 12206158 ~ 12212796 (-)
XLOC_014627 ywhaz coding downstream 103478 12164428 ~ 12193622 (-)
XLOC_014624 pabpc1b coding downstream 151335 12121944 ~ 12145765 (-)
XLOC_014626 CU468824.1 coding downstream 160229 12136736 ~ 12136871 (-)
XLOC_014625 CU468682.1 coding downstream 165920 12131045 ~ 12131180 (-)
XLOC_014630 ptpn2b coding upstream 38273 12362787 ~ 12392819 (-)
XLOC_014631 ftr56 coding upstream 74030 12398544 ~ 12404590 (-)
XLOC_014632 NA coding upstream 296412 12620926 ~ 12623962 (-)
XLOC_014633 fam210aa coding upstream 305900 12630414 ~ 12648408 (-)
XLOC_014634 AL928820.1 coding upstream 308635 12633149 ~ 12633263 (-)
XLOC_014711 CR382300.3 misc upstream 7404176 19728690 ~ 19728755 (-)
XLOC_014623 FP236813.1 non-coding downstream 250530 12046454 ~ 12046570 (-)
XLOC_014620 CR548625.1 non-coding downstream 571469 11725496 ~ 11725631 (-)
XLOC_014612 NA non-coding downstream 1069532 11219761 ~ 11227568 (-)
XLOC_014636 NA non-coding upstream 861439 13185953 ~ 13188728 (-)
XLOC_014638 CR450687.1 non-coding upstream 1040022 13364536 ~ 13370153 (-)
XLOC_014639 NA non-coding upstream 1128344 13452858 ~ 13456995 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_00388838_00393457 NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA coding CI01000320 null 388507 ~ 393457 (-)