Fish Transcriptome and Expression Database

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model fish

XLOC_014626 (CU468824.1)

Basic Information

Item	Value
gene id	XLOC_014626
gene name	CU468824.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007130.7
NCBI id	CM002903.2
chromosome length	48449771
location	12136736 ~ 12136871 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028911
TGCAGCCTTGTCAAATTTAGTGTTTACTTCTCAGTAGATCACACTGGCCAAAATGGCTGCCACAGTACATTTTTAGTCCTCGAGCCTCATGATCTTGCCTTGTGGCTATTGTGGATAGAAGTGGCTATATACAGTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113630

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00028911	True	136	snoRNA	0.43	1	12136736	12136871

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_014625	CU468682.1	coding	downstream	5556	12131045 ~ 12131180 (-)
XLOC_014622	rnf19a	coding	downstream	58153	12030832 ~ 12078583 (-)
XLOC_014623	FP236813.1	coding	downstream	90166	12046454 ~ 12046570 (-)
XLOC_014621	cpsf1	coding	downstream	158953	11897631 ~ 11977783 (-)
XLOC_014619	ctdp1	coding	downstream	289778	11632834 ~ 11846958 (-)
XLOC_014627	ywhaz	coding	upstream	27557	12164428 ~ 12193622 (-)
XLOC_014628	znf706	coding	upstream	69287	12206158 ~ 12212796 (-)
XLOC_014629	ncaldb	coding	upstream	160229	12297100 ~ 12324514 (-)
XLOC_014630	ptpn2b	coding	upstream	225916	12362787 ~ 12392819 (-)
XLOC_014631	ftr56	coding	upstream	261673	12398544 ~ 12404590 (-)
XLOC_014711	CR382300.3	misc	upstream	7591819	19728690 ~ 19728755 (-)
XLOC_014620	CR548625.1	non-coding	downstream	411105	11725496 ~ 11725631 (-)
XLOC_014612	NA	non-coding	downstream	909168	11219761 ~ 11227568 (-)
XLOC_014611	FP074861.1	non-coding	downstream	943373	11193249 ~ 11193363 (-)
XLOC_014632	NA	non-coding	upstream	484055	12620926 ~ 12623962 (-)
XLOC_014634	AL928820.1	non-coding	upstream	496278	12633149 ~ 12633263 (-)
XLOC_014636	NA	non-coding	upstream	1049082	13185953 ~ 13188728 (-)
XLOC_014638	CR450687.1	non-coding	upstream	1227665	13364536 ~ 13370153 (-)
XLOC_014639	NA	non-coding	upstream	1315987	13452858 ~ 13456995 (-)

Expression

Co-expression Network