XLOC_014639


Basic Information

Item Value
gene id XLOC_014639
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13452858 ~ 13456995 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030175
tctcgcctgaaataCTCTTAAAACTACATTTTGTGACACATTAgatgatatttttttaaacttgcgGGTCTGCAAAGCGGGGATTGTCCATTGACTTTCGCTTAGCATTAGCAGGCAGCCAGCAGATTTGAATTCGTGTTGTCCAATAGGATTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGCGACGGTTAATCTCCAGCTGTTGCACTGTTCTGACGCTCTTCTCGCCGCCGATGGAGGATGGACCTGAAGGACTCAAAGAAGCTGGAATACGTTCGTGAAGACGAAGCACAGACATTTGCAGGTACGTTTAATGTTAAATAACTTATTGTAAATATCCGTTGGGTCATATTCAATTCATAATTGACGTTACTTTGCCTTGTGTATGTAACTTCGTTATGATTACCGTCGAGTTACCTGCCGCGTGAGGGGACCCTTTTGTAATTTAAGGTTGACCAGAAATGAAAATATGATTTTTCACATAACCTGGCCATGAGACAGAGCTCGAGACGCTGAAAAAAACAGCGGTGAAACGTCCAGAGAAACAGTTCAAACACGTTTCGTTTTGTTTGGATAATGTTGTTAAGCCTTTATTGCATacgttatttataaattcagaatTTTCTCAGTGTTGGAAAGCTAACGTTCATGCTAACGTTCATGTTTACTCAGGACAGGAGTGAAGTGAATGCCTGTCCCCTTTAtgtctgaaacaatataactttaGTTTATGCATATCTCGAACCACGTTCATTTATAGCAGTTGTATTTTGTAACGTATTTAAATAACGTTATAAACGCATGTTCAAGAGAGTCCTAATCATCTGTCGTGTCAGATCGAGGGGCAGGTCTTTATCAAACCTTTGAGTTgctaatttaaagcttttttttttttttgctgttaaccTGAAGTTCACACcgatcatgattttttttatttcagaaaatgaaGTGGACGAGGAAGCAGTAGAGTGTAATAACGTAAGTATTTAGTATTTTGTCTTTCatctgtttgttaataattatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatgtatatatatatgtatgtgtgtgtgtgtgtgtgtatatacattttCCCTAGGAATTCATTGTGCAGTCTTAAATTTAATCTCCCTTTTTCTATGAACTGTAAAGTGAAGTGTTAAAGTTAAATTTGAATTTTTATGATTGCCATTATTTTTGACTTATATTTGAACCAATAGGTGATTCCTGCAATTGGTGAGGATGCATCATCATTTGAGGGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAAACACCCTTGTCAGTGAGAtcacacattttaaatcagttctcagtttaaattaaatgtttaatgtcagTATAAGCCAAAGTGTAGGATCAAAtgactattataaatgttatgactattgtaaaaatattttaattttcaagCTTTGTGTTGAACACATATGTGCATTCAAGCTTACAACTATTTGTACAGTGACAACTAAAAGGAAATGGCAACAAAGAATATtagatatagtttttatttaaagtgaatcactaatttcctttttgtttattatagtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTACCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGGTATTAACATAAaacttacataataataattttgcagaTCAAACCTTTATTTCTTGGATGGGATCATTAAGTGCCTTTTCAAGCTGCATTTAGAAAGTTCAAACTCATAGGCCTTATATACAAACCCTTTATATAGAGAACATgtctcaatttttttctttaaaaaatgtaattcataaaaatacattaaatatcttttattcagcatttgctaaacgttccaatattttttttctttattttaaaaacgggtccttttatattataaaattatttaagagtactttgttaattttttgtctttattttattttaaggtggtgcagtgggtagcacaatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccggtttcctccacaagtccaagtccaacaagtccaaagacgtgctacaggtgaattgggtaagctaaattggccatatgcatgtgtgtgaataagtgtgtatgggtgttttccagtcatgggttgcagctagaagggcatccgctgcgtaaaacgcgtgctagataggttggcggttcattccgctgtggcgaccccagattaataaagggactaagccgaaaataaaataaataaatggatgattttattttacaatagatTCAGACTTTCGTGCTGCTCTAATTCTGCTCCCCCATATCTTTAAAGAGAAAGTTGATTGCTTACAGTAATTACACTGGAAGAGGTTTGGGTACTGTTGGTTAAACACTTTGTAATACTCTGATAGATGTTATGCAGTTCTGACagattttacattgtttattgatgtcttttttctttttcttttcacagtgggatgatgatgatgctccCTACCCACCTCTACAGATGGTTGAAAATCCTTTGCAAAGTGTTGGAGAATAGGAGTTAAAAGGCATTATTACATCCTTCCCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCGAGATGGAGCAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAGAGAACTGGTATTACTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTTTTGCATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGACACAATGCTAAGAATTTTTTCTGCCCAACATCCTTGATGAGATTGACGCATTCAGGTGTTCAAATTGAACTCtttttgtgtgcatgtgagacTGCTAATGGAGAAGAAATGACTCTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTGGCAAGTTTATAATACTGCTGTTGTATGATTCATAGTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGTTATAAACCAAGACAGATGGACTTTCAGGCTCTTTAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTGATCAAAAGtgtttttgagatctaaaatgaTTAAGGGTATACAGTAAGTTTCAATTTACTGTATGGAAATAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAAAAATATACTTCATGAGGTCTAGTGCTGTTTTAGAAAGATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGtactggtgttaaaaaaaataacattaagcttttttgctgtttcataaaatgttttaatgtttaagcagcaatttttttaagtttatgcatCTGGTATGACATTGTGATAGTTTAAAACTTTCATCCTCTAAAAAGGtgacaatgtaattttttttgaaTCTTTCAATGAGTGTTTGTGATAAAAGGTTACAagtataaaagtacaattatCGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaatgaaatttaatgtgTATGGAGTACAAATCTGAAA
>TCONS_00030176
AGCTCCCGCTGACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGcgctgtatttttaaataaactgccgattcgagtttaaaataactacattctcgcctgaaataCTCTTAAAACTACATTTTGTGACACATTAgatgatatttttttaaacttgcgGGTCTGCAAAGCGGGGATTGTCCATTGACTTTCGCTTAGCATTAGCAGGCAGCCAGCAGATTTGAATTCGTGTTGTCCAATAGGATTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGCGACGGTTAATCTCCAGCTGTTGCACTGTTCTGACGCTCTTCTCGCCGCCGATGGAGGATGGACCTGAAGGACTCAAAGAAGCTGGAATACGTTCGTGAAGACGAAGCACAGACATTTGCAGaaaatgaaGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTCCTGCAATTGGTGAGGATGCATCATCATTTGAGGGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTACCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGgtggtgcagtgggtagcacaatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccggtttcctccacaagtccaagtccaacaagtccaaagacgtgctacagtgggatgatgatgatgctccCTACCCACCTCTACAGATGGTTGAAAATCCTTTGCAAAGTGTTGGAGAATAGGAGTTAAAAGGCATTATTACATCCTTCCCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCGAGATGGAGCAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAGAGAACTGGTATTACTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTTTTGCATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGACACAATGCTAAGAATTTTTTCTGCCCAACATCCTTGATGAGATTGACGCATTCAGGTGTTCAAATTGAACTCtttttgtgtgcatgtgagacTGCTAATGGAGAAGAAATGACTCTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTGGCAAGTTTATAATACTGCTGTTGTATGATTCATAGTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGTTATAAACCAAGACAGATGGACTTTCAGGCTCTTTAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTGATCAAAAGtgtttttgagatctaaaatgaTTAAGGGTATACAGTAAGTTTCAATTTACTGTATGGAAATAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAAAAATATACTTCATGAGGTCTAGTGCTGTTTTAGAAAGATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGtactggtgttaaaaaaaataacattaagcttttttgctgtttcataaaatgttttaatgtttaagcagcaatttttttaagtttatgcatCTGGTATGACATTGTGATAGTTTAAAACTTTCATCCTCTAAAAAGGtgacaatgtaattttttttgaaTCTTTCAATGAGTGTTTGTGATAAAAGGTTACAagtataaaagtacaattatCGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaatgaaatttaatgtgTATGGAGTACAAATCTGAAA
>TCONS_00029758
AGCTCCCGCTGACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGcgctgtatttttaaataaactgccgattcgagtttaaaataactacattctcgcctgaaataCTCTTAAAACTACATTTTGTGACACATTAgatgatatttttttaaacttgcgGGTCTGCAAAGCGGGGATTGTCCATTGACTTTCGCTTAGCATTAGCAGGCAGCCAGCAGATTTGAATTCGTGTTGTCCAATAGGATTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGCGACGGTTAATCTCCAGCTGTTGCACTGTTCTGACGCTCTTCTCGCCGCCGATGGAGGATGGACCTGAAGGACTCAAAGAAGCTGGAATACGTTCGTGAAGACGAAGCACAGACATTTGCAGaaaatgaaGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTCCTGCAATTGGTGAGGATGCATCATCATTTGAGGGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTACCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGgtggtgcagtgggtagcacaatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccggtttcctccacaagtccaagtccaacaagtccaaagacgtgctacaggtgaattggtgggatgatgatgatgctccCTACCCACCTCTACAGATGGTTGAAAATCCTTTGCAAAGTGTTGGAGAATAGGAGTTAAAAGGCATTATTACATCCTTCCCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCGAGATGGAGCAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAGAGAACTGGTATTACTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTTTTGCATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGACACAATGCTAAGAATTTTTTCTGCCCAACATCCTTGATGAGATTGACGCATTCAGGTGTTCAAATTGAACTCtttttgtgtgcatgtgagacTGCTAATGGAGAAGAAATGACTCTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTGGCAAGTTTATAATACTGCTGTTGTATGATTCATAGTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGTTATAAACCAAGACAGATGGACTTTCAGGCTCTTTAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTGATCAAAAGtgtttttgagatctaaaatgaTTAAGGGTATACAGTAAGTTTCAATTTACTGTATGGAAATAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAAAAATATACTTCATGAGGTCTAGTGCTGTTTTAGAAAGATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGtactggtgttaaaaaaaataacattaagcttttttgctgtttcataaaatgttttaatgtttaagcagcaatttttttaagtttatgcatCTGGTATGACATTGTGATAGTTTAAAACTTTCATCCTCTAAAAAGGtgacaatgtaattttttttgaaTCTTTCAATGAGTGTTTGTGATAAAAGGTTACAagtataaaagtacaattatCGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaatgaaatttaatgtgTATGGAGTACAAATCTGAAA
>TCONS_00029759
ATGGACCTGAAGGACTCAAAGAAGCTGGAATACGTTCGTGAAGACGAAGCACAGACATTTGCAGaaaatgaaGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTCCTGCAATTGGTGAGGATGCATCATCATTTGAGGGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTACCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGGTATTAACATAAaacttacataataataattttgcagaTCAAACCTTTATTTCTTGGATGGGATCATTAAGTGCCTTTTCAAGCTGCATTTAGAAAGTTCAAACTCATAGGCCTTATATACAAAC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0007492 endoderm development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009888 tissue development biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0060026 convergent extension biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0060182 apelin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030175 False 4041 lncRNA 0.35 1 13452858 13456898
TCONS_00030176 False 2207 lncRNA 0.38 6 13452858 13456995
TCONS_00029758 False 2216 lncRNA 0.38 6 13452858 13456995
TCONS_00029759 True 469 lncRNA 0.39 4 13454968 13456647

Neighbor

gene id symbol gene type direction distance location
XLOC_014638 CR450687.1 coding downstream 82705 13364536 ~ 13370153 (-)
XLOC_014637 zfpm2b coding downstream 166120 13193215 ~ 13286738 (-)
XLOC_014636 NA coding downstream 264130 13185953 ~ 13188728 (-)
XLOC_014635 slc25a32a coding downstream 443443 12937066 ~ 13009415 (-)
XLOC_014633 fam210aa coding downstream 804450 12630414 ~ 12648408 (-)
XLOC_014640 epb41a coding upstream 182491 13639486 ~ 13774502 (-)
XLOC_014641 ccn2b coding upstream 346160 13803155 ~ 13808632 (-)
XLOC_014642 stx12 coding upstream 448073 13905068 ~ 13923104 (-)
XLOC_014643 trnau1apa coding upstream 466605 13923600 ~ 13933204 (-)
XLOC_014644 sh3bgrl3 coding upstream 482755 13939750 ~ 13950231 (-)
XLOC_014711 CR382300.3 misc upstream 6271695 19728690 ~ 19728755 (-)
XLOC_014634 AL928820.1 non-coding downstream 819595 12633149 ~ 12633263 (-)
XLOC_014632 NA non-coding downstream 828896 12620926 ~ 12623962 (-)
XLOC_014626 CU468824.1 non-coding downstream 1315987 12136736 ~ 12136871 (-)
XLOC_014646 NA non-coding upstream 605047 14062042 ~ 14066550 (-)
XLOC_014657 NA non-coding upstream 2569898 16026893 ~ 16031105 (-)
XLOC_014658 CR385068.2 non-coding upstream 2570424 16027419 ~ 16027490 (-)
XLOC_014659 CR385068.1 non-coding upstream 2571461 16028456 ~ 16028590 (-)
XLOC_014660 CR385068.3 non-coding upstream 2572313 16029308 ~ 16029443 (-)

Expression


Co-expression Network