XLOC_014642 (stx12)


Basic Information

Item Value
gene id XLOC_014642
gene name stx12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13905068 ~ 13923104 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028938
GCATCAGACCGGAAGTCCCGAGTAAGGAGCGGCCCCAAGCTCAAGTAAGCATTTTCAGGCGCTGGTTGGCTTCCTGCTGTAGTTTGCTCCACCCTTTCTCCTGAGACGTCCAGCAGATTCTCCTGCAGTCATGTCGTACGGAAGGACAGATCAGCGCGCTTCGCCAAAAGACTTCAGCAGCCTCATTCAGACATGCAGCTCCAATATTCAGAAGATCACACTGAATACCGCTCAAATCAAGGGCTTGGTCAACCAACTGGGCACAAAACTAGACACCAGCGGCCTGCGGGAGAGACTTCAGTATATGCAGCACCACACAAACCAGCTGGCAAAGGAGACCAACAAACACCTGAAAGACCTCGGCTCAATCTCATTGCCCGTCTCCCTCTCCGAACAGAGACAGCAAAAGATCCAGAAGGACCGGCTGATGAATGATTTCTCCGCTGCTCTAAACAACTTTCAGGCTGTGCAGCGTCAAGCCGCGGAGAAAGAGAAGGAGTCAGTGGCCAGAGCTCGAGCGGGGTCTCGTCTCTCTGCTGACGACGGAGGTCACGATGAGCAGCTGGTCTCCTTTGATAAtAATGATGATTGGGGCAAGACCACCACTCAGACAGAAGACGTGGCCATAACAGAGGAGGACCTGGAGCTCATTAAAGAAAGAGAAACCGCCATTCGTCAACTTGAGTCGGACATTTTGGATGTGAATCAAATCTTCAAGGATCTTGCCGTGATGATCCATGATCAGGGTGAAATGATCGATAGCATAGAGGCTAATGTGGAGAGTGCAGAAGTGCATGTGGAGAGAGGAGCTGAGCAGCTTCAGAGAGCTGCACAATATCAGCAAAAGTCCCGTAAGAAGATATGCTTCCTGGCAGTGGGCCTTTCCATAGTGGTGCTCATCATCGGCATTGTCATCTGGAAGCTCTCCTCGTGAAGATCCTTCCTCTGCCCCTcacatttctttaatttattttcccAATCTCAAACCCAGTGCCATCCACCTGGGAAAGAAGGTCAGATACTCTCAACAGCACCTGTAGAGTTCTTCTCTGTAGGTTTGCAGGGTTAGAAGCACTATAAAGTGGCTAAAACGAATGTAACATTCCCAAGACCTTTAGCGTATGATGAAGGCGGATGAGCTCACAGGTGGGGTGGGAAAACAATAATATAAGTGATATAAAAAATTCAATTTTGATTCTTGTGATATATTTCTAGCACTAACACTACTTTACTTTTCTTATTAAAACCGGGTTATTTCCTATTTGACAAGTTTGTTGGAATGAGACGAGGTGTAAAAAAAGGCGTTTGATGACTGAAAGTGTTTTTCTATATCTAACTGTAATATAACGTTGGCTTTAGATGTCTTGTACATTTCAAATTTATCCAAGTTGTTGAGTCACTCCACATGTTAAAGACGAAACGCTTAGATGAGCTGCAGAATTCATTGTACAGTTGATGCCATGTTGTTGATTCCTTAGAGCAGTAGAACAGCAAATATGAGGCAGCGATGATACCTAAAGCTTAAACATCTCTGCCCTTCAGTTTCAACACTGTTACTGGTGTCAGGTTTATTACACAGATGGTCATATAGCTGTAAATGTGTTGTATAAGAACTCCTAATCAATATTATGGCTGAAACAGATTTGTATATTACAATAAAGTCTGCACAGTATGTTAAAAAAACGATGTAAAAAGAATCGCACCCATACTTTtagaacttgcaaaaaaaaaaagattgctttgttttttttcttttttaaagattgATTTATATGACTTCTATAAGTACATGAGTAAAGAAACGTGTCTTAATG
>TCONS_00028939
GCATCAGACCGGAAGTCCCGAGTAAGGAGCGGCCCCAAGCTCAAGTAAGAGCATTTTCAGGCGCTGGTTGGCTTCCTGCTGTAGTTTGCTCCACCCTTTCTCCTGAGACGTCCAGCAGATTCTCCTGCAGTCATGTCGTACGGAAGGACAGATCAGCGCGCTTCGCCAAAAGACTTCAGCAGCCTCATTCAGACATGCAGCTCCAATATTCAGAAGATCACACTGAATACCGCTCAAATCAAGGGCTTGGTCAACCAACTGGGCACAAAACTAGACACCAGCGGCCTGCGGGAGAGACTTCAGTATATGCAGCACCACACAAACCAGCTGGCAAAGGAGACCAACAAACACCTGAAAGACCTCGGCTCAATCTCATTGCCCGTCTCCCTCTCCGAACAGAGACAGCAAAAGATCCAGAAGGACCGGCTGATGAATGATTTCTCCGCTGCTCTAAACAACTTTCAGGCTGTGCAGCGTCAAGCCGCGGAGAAAGAGAAGGAGTCAGTGGCCAGAGCTCGAGCGGGGTCTCGTCTCTCTGCTGACGACGGAGGTCACGATGAGCAGCTGGTCTCCTTTGATAAtAATGATGATTGGGGCAAGACCACCACTCAGACAGAAGACGTGGCCATAACAGAGGAGGACCTGGAGCTCATTAAAGAAAGAGAAACCGCCATTCGTCAACTTGAGTCGGACATTTTGGATGTGAATCAAATCTTCAAGGATCTTGCCGTGATGATCCATGATCAGGGTGAAATGATCGATAGCATAGAGGCTAATGTGGAGAGTGCAGAAGTGCATGTGGAGAGAGGAGCTGAGCAGCTTCAGAGAGCTGCACAATATCAGCAAAAGTCCCGTAAGAAGATATGCTTCCTGGCAGTGGGCCTTTCCATAGTGGTGCTCATCATCGGCATTGTCATCTGGAAGCTCTCCTCGTGAAGATCCTTCCTCTGCCCCTcacatttctttaatttattttcccAATCTCAAACCCAGTGCCATCCACCTGGGAAAGAAGGTCAGATACTCTCAACAGCACCTGTAGAGTTCTTCTCTGTAGGTTTGCAGGGTTAGAAGCACTATAAAGTGGCTAAAACGAATGTAACATTCCCAAGACCTTTAGCGTATGATGAAGGCGGATGAGCTCACAGGTGGGGTGGGAAAACAATAATATAAGTGATATAAAAAATTCAATTTTGATTCTTGTGATATATTTCTAGCACTAACACTACTTTACTTTTCTTATTAAAACCGGGTTATTTCCTATTTGACAAGTTTGTTGGAATGAGACGAGGTGTAAAAAAAGGCGTTTGATGACTGAAAGTGTTTTTCTATATCTAACTGTAATATAACGTTGGCTTTAGATGTCTTGTACATTTCAAATTTATCCAAGTTGTTGAGTCACTCCACATGTTAAAGACGAAACGCTTAGATGAGCTGCAGAATTCATTGTACAGTTGATGCCATGTTGTTGATTCCTTAGAGCAGTAGAACAGCAAATATGAGGCAGCGATGATACCTAAAGCTTAAACATCTCTGCCCTTCAGTTTCAACACTGTTACTGGTGTCAGGTTTATTACACAGATGGTCATATAGCTGTAAATGTGTTGTATAAGAACTCCTAATCAATATTATGGCTGAAACAGATTTGTATATTACAATAAAGTCTGCACAGTATGTTAAAAAAACGATGTAAAAAGAATCGCACCCATACTTTtagaacttgcaaaaaaaaaaagattgctttgttttttttcttttttaaagattgATTTATATGACTTCTATAAGTACATGAGTAAAG
>TCONS_00028940
GGAAGTAGAAAGTGCATCAGACCGGAAGTCCCGAGTAAGGAGCGGCCCCAAGCTCAAGTAAGCATTTTCAGGCGCTGGTTGGCTTCCTGCTGTAGTTTGCTCCACCCTTTCTCCTGAGACGTCCAGCAGATTCTCCTGCAGTCATGTCGTACGGAAGGACAGATCAGCGCGCTTCGCCAAAAGACTTCAGCAGCCTCATTCAGACATGCAGCTCCAATATTCAGAAGATCACACTGAATAGTGAGTGTCTGCGTCTGCCCTGACATAACTGGTTGCAGAGAGCTAATACAAGTACCAGAGACTGTATCAGATGGTCACAATGGTTATGATTGGCATGTATAAGATGAATAAAATGACATGAGAAC

Function

symbol description
stx12 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006906 vesicle fusion biological_process
GO:0048278 vesicle docking biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0098837 postsynaptic recycling endosome cellular_component
GO:0012505 endomembrane system cellular_component
GO:0030285 integral component of synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko04145 Phagosome
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040625-11 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12).

Ensembl:

ensembl_id ENSDARG00000098813

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028938 False 1814 mRNA 0.43 10 13905068 13923091
TCONS_00028939 False 1801 mRNA 0.44 10 13905083 13923091
TCONS_00028940 True 365 lncRNA 0.48 2 13919007 13923104

Neighbor

gene id symbol gene type direction distance location
XLOC_014641 ccn2b coding downstream 96436 13803155 ~ 13808632 (-)
XLOC_014640 epb41a coding downstream 130566 13639486 ~ 13774502 (-)
XLOC_014639 NA coding downstream 448073 13452858 ~ 13456995 (-)
XLOC_014638 CR450687.1 coding downstream 534915 13364536 ~ 13370153 (-)
XLOC_014637 zfpm2b coding downstream 618330 13193215 ~ 13286738 (-)
XLOC_014643 trnau1apa coding upstream 496 13923600 ~ 13933204 (-)
XLOC_014644 sh3bgrl3 coding upstream 16646 13939750 ~ 13950231 (-)
XLOC_014645 paqr7a coding upstream 38292 13961396 ~ 13962469 (-)
XLOC_014646 NA coding upstream 138938 14062042 ~ 14066550 (-)
XLOC_014647 nr0b2b coding upstream 230382 14153486 ~ 14155781 (-)
XLOC_014711 CR382300.3 misc upstream 5805586 19728690 ~ 19728755 (-)
XLOC_014636 NA non-coding downstream 716340 13185953 ~ 13188728 (-)
XLOC_014634 AL928820.1 non-coding downstream 1271805 12633149 ~ 12633263 (-)
XLOC_014632 NA non-coding downstream 1281106 12620926 ~ 12623962 (-)
XLOC_014657 NA non-coding upstream 2103789 16026893 ~ 16031105 (-)
XLOC_014658 CR385068.2 non-coding upstream 2104315 16027419 ~ 16027490 (-)
XLOC_014659 CR385068.1 non-coding upstream 2105352 16028456 ~ 16028590 (-)
XLOC_014660 CR385068.3 non-coding upstream 2106204 16029308 ~ 16029443 (-)

Expression


Co-expression Network