XLOC_014646


Basic Information

Item Value
gene id XLOC_014646
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 14062042 ~ 14066550 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030177
TTTAAATTTCAAAttgaaaaacttttatttttgtagcATGCAAAATAAACTCTCCCCTGAAGAAAGACAATTTATTTGCCCATGCGATGCATGACACATCCACAAAAAGTGTTGTTTTGCACTGCATACCTGATCAATTCAGAAGTAAACATTTTGTGTTTGGCATTCAACTTAAAAGGTTTTCCTTACCTCTTTATAGAAAGATTCATTTGAATATAATGAATAACGCATGAGTATGAAGCTATAAATCACAATGGAAGACCAGATTTTCTATGTTGCAAATTTCATTAATGTGAATAGTTCATCAGGCACCAAGATTCTCTAGGCTAAGATGTGACGTTGTTTTATAGATAATGATTCAAAAACAGTGCTGCCAAATGGGTGAATCTCACAAAGAAATAttcaattttacataaaaataaatgcatgtaaatatgtTACACAAATAATACAATCATATGCACTATGTAAAAGTTAATATAGAGCTTTTTGTCTGGATTTATTAGGTGCACccaaaaatacatttacttaCTATGTACTCATCCTATTGTTGCTCCGTTTCTTTAttatgatgaacacaaaagaagagattttgaagaatgtcagtaACCAAATAGTTGACTTCCTTGTAGGGAAAATAAATGCCATAGAACTCAATGGTTACAGCATTGCTAAGTGTAATATATAAGATATTTTgcagattaatattatttttcaacTAAAGAACGTTTATAATTTATCAAGAAAACAAAGCAAATttttcagaattaaaaaaaatgagaaaTGAATTGCTGACAATGTAAGGGATATACAGATTTAGAGAAGCAGAGAAAAAGTAAACATATTTTTCTGTTATTGACACATGGTTTTATTTGTCTGACAACAGCACATGCTTAGAAAACAACACGATTTGATTTAAATATGATATCAATTTGAAGCCTTTTGTGTTTAACTAAAAGCTCCTTAAAAAAAAGACTCAAATGTAAAGAATTAAGAGTTTCAATtcggggcagcatggtggctcagtggttgttgcctcacagcaagaaggttgctggtttgagtaccAGCTAGATAAGTTGGCAAGCTAGGCAAGTTGGcactctgtgtggagtttgcatgttcccccttgtgttggcgtgggtttcctctgggtgctttagtTTTTCCggagacatgtgctataggtaaattgggtaagctaaattgtttgtagtgtgtgtgtgtgtgtgtgtatatgggtgtttccagcctgatctcacgaggaaacataagtattttacgttttgtcagtttacaTGGCTAATTTGTGcgagttcagttgtatgaaaatttaagattttaaaaaagagggcgtggcacctaacccctcCCCTAACCTCAactcattgggtgatgagcaaattgtacgaattagatcgtacgaattcatacgaataagccactaaatcaaaaagttacgaattgctgtatGATTACGTTGGTGTTTCGCAATAGTGAGTTGGTATTTcccaaaaacatatgctgtaatagttgtcagttcattccgcagtgACGACcgctaaaatagagactaagccgaagaaaaatgaatgagtttAAATTCTGTACACATTGATATTTATGTAGATCTTTAGTATTGAGTcatgtaattaaatttattaagttacttttcagacaaagtaataGCTgggttaaggctggtttatacttctgtgtcataTGAAGGGCGTTACCTACAGCTCTGCAATAatacttctgaaacgctagctggcagtaggtgtttatatTCTGTGTCAAGTTcatcgctggtgttttgtttttcctgaacattacaagtggctcaaactcgctcattcagaggcaggaaccggcagacgtgtaACAACTtacataaggtaaacacaaaacaaagattCCACCTGAAGCTCCtttacaggactccacacttgtaaacactcactccatcaGGCTTGTGGCTCTTATCACTGCCCATACTCTCGTCAccactaccaagctgaccaatcacagagcttgcactatgtgtagttacattttttgagaggtgctcaTCAGCGTCGGCGAAAGCCACGTTAAGGGCTATGCGACCACACGCAGGCTGCATCAGAGCCCTATGCGTGCGCTTgactcagaagtataaatcagcttttgcAGTCTATCTACttggttaccaacattcttcaaaatgcttttgaaaaataCAACTTTAGAGCTATGGAGAAGGAGCAAATGATGAGTAAACAATcacaatttttgggtgaacaattacTTGAATTGTCACAATGCAgagaaaaaactttttttaaacgcaataaatgaattatttttttaatttgattagaAGGTAAAAATGATTTATACTAGAAAATTCTCCACTTTGTGAGATTCACTCAAATGACGACGAGCCTAGTCTTTTGacaaacatatgctgcataaatgTGTGTCATCCAAACACAAGTAAAGTCCAGCACATTGGCACACGACATCAAGGATATTTCTTTTCAGTCTTTCACATTTGGAAGCAGTACTCAAAAAACAGAGCAAGGGACCCTTCAGCACACAACGGCCCCAGCTTCATCTGTATCTTATCACCGTAAAGTCCCTTAAACAGAAAAAGCTGGGGAACATATGAGGAACTGAGCCAGGCTGAGTCTTCAAAGAGCGAGCAGACTTCATGGAGGAGGGGTCTCACTCAGCGGCCCTCGCAAGGGCTGGTTCTCATCATTCTGACAATAAAAATGAGTggaataaaaacaaagcaaaacgtCTCTTttgaacgaaaaaaaaaaaatgcagccagAGATTTCTGCAAACGGGGTCTCTTTCTTCAAAAGATCCTCCTTCTGGAGCTTAGAGGAGGTTATCCTCCTGCTGGAATGCTTTTGGAGAGAAAATCCGGCACATTCTTTGCAGACTCCCTGTGGATAGAGGGACAGAAAGGACCATAGAAGGCTGCTAATTCTGTTGCTCAGGGTCCGACGCTAGAATTGCATACACTTCCATAAAAACAGGGTTGCAAAAGCATGCAATAAAACGCTCCTTAAAACTTCACAAACAGCACAGTAcacatgtatgtttatatttatatatatgagtCGTCCCTTTTTGAAGCCGGTTGGCCTCTTAAATCCAATAAACAAGGCACTTAAGCACCAGAGAGGTGGGCAATATTCCAGTACAGGACAATGGAGATTGGTGGGGggtgtggtGTGTGCTTGTTAAACACTGCAACATGACATGCTTTTCATAAGAAATGGGGCTATTTAAATATCTCTACATGTTTAGAACAAACGGGTGTTCTTTTCCCACCCCAAGTAAAAATGCAACAGAAAACAAGTTGGTGACACTATACTTGAacggggtgttcataagactgtcaagACAGCTTTATAAGAATATATGGAGGTTTTATGCATGGTTATGACTGTCACTGGGTGTCATTGGGTGTCAAAGGCAAAGATGCCTTTGTTATCACAATTTGACATAAACTTATACCTCTTAACCTGTCTTTGCCATGACAACTTGATATTACCAAGTCATAACTTGACATTACtaacttgtcataaacctgtcataaacatgaatgTCATGAGGCCATTAATGATGCGTcaggaatatatattttatattttttttagtggAACAAGTTAaattaaggctggtttatacttctgcattgagtgattGGTGTGACCCATGGCACCTCACTTACACATAGCcgtgtattattatatatatatttaatgtatatatatatatatatgcgtgctGTTTGAGTTgctttgcaataacacttccgaaatgctagctggcagtaggtttttttgttcctctgtgttgtgtttatttgagggtgttttatttttcctgaacactaccttaatgtacacTTTCAATAAAcaaaggtatgtgagctgtcactaggatggtaccttttcaaaagctaccaatttgtaccttaaaaggtccatattaatatgtcaatggtacatattagtacttagAAAGCACAAAAGTGCTCCTCCTAAAATGTTTAGGttctaatatatacttttgaggtaccaatatggaccctttgtgtacaaatgtgtaccttttgaaaaagtaccaccctagtgacagcttatgtacctttatttttgagggtgtacaagtagctaaaactcgctcattctgaggTGGAAACTCATGGACAGGCGTCTACTTTAATCATAAGAAAAACCAAAACCAGTAGAGCTTATTCACAgcactcaacacttgtaaacactcgctcctaCGGGTTCGTGCAGCTCTTGGCCCCAACCTCAttggtcacagctaccaagccgaccaatcgcaGAGCATTGGTGTTAGCCACagtag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030177 True 4383 lncRNA 0.38 2 14062042 14066550

Neighbor

gene id symbol gene type direction distance location
XLOC_014645 paqr7a coding downstream 99573 13961396 ~ 13962469 (-)
XLOC_014644 sh3bgrl3 coding downstream 111811 13939750 ~ 13950231 (-)
XLOC_014643 trnau1apa coding downstream 128838 13923600 ~ 13933204 (-)
XLOC_014642 stx12 coding downstream 138938 13905068 ~ 13923104 (-)
XLOC_014641 ccn2b coding downstream 253410 13803155 ~ 13808632 (-)
XLOC_014647 nr0b2b coding upstream 86936 14153486 ~ 14155781 (-)
XLOC_014648 tbxta coding upstream 120990 14187540 ~ 14191592 (-)
XLOC_014649 CR394532.2 coding upstream 836829 14903379 ~ 14970813 (-)
XLOC_014650 CR394532.1 coding upstream 837066 14903616 ~ 14968192 (-)
XLOC_014651 phactr4a coding upstream 1075977 15142527 ~ 15229421 (-)
XLOC_014711 CR382300.3 misc upstream 5662140 19728690 ~ 19728755 (-)
XLOC_014639 NA non-coding downstream 605047 13452858 ~ 13456995 (-)
XLOC_014638 CR450687.1 non-coding downstream 691889 13364536 ~ 13370153 (-)
XLOC_014636 NA non-coding downstream 873314 13185953 ~ 13188728 (-)
XLOC_014634 AL928820.1 non-coding downstream 1428779 12633149 ~ 12633263 (-)
XLOC_014632 NA non-coding downstream 1438080 12620926 ~ 12623962 (-)
XLOC_014657 NA non-coding upstream 1960343 16026893 ~ 16031105 (-)
XLOC_014658 CR385068.2 non-coding upstream 1960869 16027419 ~ 16027490 (-)
XLOC_014659 CR385068.1 non-coding upstream 1961906 16028456 ~ 16028590 (-)
XLOC_014660 CR385068.3 non-coding upstream 1962758 16029308 ~ 16029443 (-)
XLOC_014661 NA non-coding upstream 1969462 16036012 ~ 16044582 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_01394827_01394991 NA coding CI01000320 null 1394798 ~ 1396099 (-)