XLOC_014643 (trnau1apa)


Basic Information

Item Value
gene id XLOC_014643
gene name trnau1apa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13923600 ~ 13933204 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028941
AGTgctgtaggtggcgctgtcggaCAATAGGACTTTTTAAACACTCGCACGTGCCGCGAGTCTCTCAACCTGTTTTTGCTTCCTCAAAGAAAAAGTACGAGAAGCGCGGGTTTGAAATTAATAATCTTACAATTCGACATTACTAAAGAAACAGCACTTTAGAAAACTAACAAAGACTTTCGAATGAACTCGGACACACAAACGAAACATGAACAGCCTCTGGATGGGCAACCTGGAGCCCTACATGGATGAAGATTTCATCTGCAGAGCTTTTGCTCAAATGGGAGAAACAGTTGTGAAAATCAGACTGATCAGAGAcaaaataacaggGAAAAATGCAGGATATGGCTTTGTGGAGCTGGCAGATGATACAGCAGTGGAAAGATGCCTCCGCAAAGTGAATGGAAAACCTTTACCTGGTGCCACTCCTCCAAAGAGATTCAAGCTGAGTCGTTCTAATTATGGGAAACAGGGTGAAAGCTCTACATTCTCCCTCTTCGTGTCGGATCTCACACCGGATGTGGACGATGGCATGTTATATGAGTTCTTTCATTATCATTTTTCGTCCTGCTGCAGTGGGAAGATTGTTTTGGACGCCAATGGACACTCAAAGTGCTGTGGCTTCGTGAGCTTTGAAAGTGAGAGGGAGCAAAAACGGGCTCTGGTTGATCTCCAAGGGGCTACTGGACTCGGGAAGAAAGCTTTACGCCTCAGCTTGGCTTCAAGTAGAGTGAATAAGAAGAAAGAGTCGTCTGAGAACCAAATTTGGCAGTATCATTCAGACAGCAAGAACGCCTCATTTATAAACCAGTACTATTACCCACAGAACCTCAGCTATTTATCTACATATGACTGGAACTACAGTTTGGACTACTTAAATCCTTCCCAGAACACAACACCGGTAGATGTGACTCAGTCTGAACAGACAGAAGATGATGACCTAGAGTATCCAGACTCTGAGATAAATGTGACGGAGGCAAATGAGACATTTATGGCCCAGAGCGAGGAACTGTacagtgctctgattggctgtttcttCCAGCCTCCTGAATCATGGGACGGGGTCACATGTAGTGCCTCAAGCTACCTTCCAGAGCCAATTAATCAATATGAGATGGAGGACTCCTGTTCATCTAACTGGGTGACAacttaattaaaacaaacaaacaaaaaaaacttcggttgactttatttttgtaataaattcaACTTATGCAATATGATTTGACATGTTGCTGCTGTAGTAAATATTAATTCAGGTTTATCTTTATCTTATGTTGCCTTTGTTCTTCTGATAAGAAAATAAGTTTAATAAGTGACCAACATAAATgtattcttgttttgttttttccattacatttgttgaattaaataaaatcaacatgaaAAACATGTACAATTGCACTAAGGGCAAAAGCTGCTTAAACATGAAGGATAGTCACCAAACGTTTAAAGTTCAGTATATCGAAGTTAATGGAGTGTATgcacatggacttttaatttCAACCAGCCAGTCTCCGTAAACTgcctttccattataaaattgccacgtttaaagtcTGGTTTCTTTCAAAATAAGAGATCTTTACTGACtgataaatatatcaaatattaaGTGGGTCccagaccggacaagaagcacttCATTAAATTCCAATTCTCCCGTTATGTCTTTAAAATACGAGTTAATTTcaccccagtatttttaatgggGTTTCTGTGCTTGGCTGCTGGTACTTACGGTGCTAGCGGTTacagtctttcatcttgttttacactgaaacagctaaatgaatgcctaagtctatttaactgaatgtattgtaattgcattacaacatcaGTGCTGTTAAAGGAACTGTAAGAAATTGAAAAATTAACTTTAAGCCTTTACTGGAAATTCATcaatggctgaaaaacactagctgtgcatataccccgtTGGTAAAGAAAATCAATTTATGACACTGTTCTTGACAGCAGCATTTTTAAAAGTGtctaaaactttgtttttttttattatgttgatGTTACCACTattcaatatacagtatattctcTGGATTTATTATGCATGGATTTGAGTAAACGTGCAGATTTGTTTTATTCTAgaaaggtctgataacatttccacatttcaaataaaaatattgtcatttgtaattattttaatatattttaatttagacAAAGCTGGTCAATATAGCAGATGTTTTCAATTGTTCTGATTGAAAATCAGGGATtgtacacaaaatacacacatactgtatatatcttTGTTGGTACATTTAATAATGCGTTGTCTAAAAAGAAAACGCGTCTGATGACATGGTgccattttattttgtgaaaaaatTGAAGTGTCATCAGTAATTTAAAGGAAAACATGTTTTAATCAAACAACTATAAATTGTATATCCAGAGAAACTGAcattcttgattttttaaatttttaatgcattaaatttGTTAACATTTC
>TCONS_00028942
gtcggaCAATAGGACTTTTTAAACACTCGCACGTGCCGCGAGTCTCTCAACCTGTTTTTGCTTCCTCAAAGAAAAAGTACGAGAAGCGCGGGTTTGAAATTAATAATCTTACAATTCGACATTACTAAAGAAACAGCACTTTAGAAAACTAACAAAGACTTTCGAATGAACTCGGACACACAAACGAAACATGAACAGCCTCTGGATGGGCAACCTGGAGCCCTACATGGATGAAGATTTCATCTGCAGAGCTTTTGCTCAAATGGGAGAAACAGTTGTGAAAATCAGACTGATCAGAGAcaaaataacagggtgaggaaTCATCGGTCTGTCTGTCCATCGTCTGTCTGTCGGttagtttcagtttgtttttgattTCTTAAGGAAAAATGCAGGATATGGCTTTGTGGAGCTGGCAGATGATACAGCAGTGGAAAGATGCCTCCGCAAAGTGAATGGAAAACCTTTACCTGGTGCCACTCCTCCAAAGAGATTCAAGCTGAGTCGTTCTAATTATGGGAAACAGGGTGAAAGCTCTACATTCTCCCTCTTCGTGTCGGATCTCACACCGGATGTGGACGATGGCATGTTATATGAGTTCTTTCATTATCATTTTTCGTCCTGCTGCAGTGGGAAGATTGTTTTGGACGCCAATGGACACTCAAAGTGCTGTGGCTTCGTGAGCTTTGAAAGTGAGAGGGAGCAAAAACGGGCTCTGGTTGATCTCCAAGGGGCTACTGGACTCGGGAAGAAAGCTTTACGCCTCAGCTTGGCTTCAAGTAGAGTGAATAAGAAGAAAGAGTCGTCTGAGAACCAAATTTGGCAGTATCATTCAGACAGCAAGAACGCCTCATTTATAAACCAGTACTATTACC

Function

symbol description
trnau1apa Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human TRNAU1AP (tRNA selenocysteine 1 associated protein 1).

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006412 translation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-502 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human TRNAU1AP (tRNA selenocysteine 1 associated protein 1).

Ensembl:

ensembl_id ENSDARG00000101323

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028941 False 2479 mRNA 0.37 9 13923600 13933204
TCONS_00028942 True 875 lncRNA 0.44 6 13928251 13933186

Neighbor

gene id symbol gene type direction distance location
XLOC_014642 stx12 coding downstream 496 13905068 ~ 13923104 (-)
XLOC_014641 ccn2b coding downstream 114968 13803155 ~ 13808632 (-)
XLOC_014640 epb41a coding downstream 149098 13639486 ~ 13774502 (-)
XLOC_014639 NA coding downstream 466605 13452858 ~ 13456995 (-)
XLOC_014638 CR450687.1 coding downstream 553447 13364536 ~ 13370153 (-)
XLOC_014644 sh3bgrl3 coding upstream 6546 13939750 ~ 13950231 (-)
XLOC_014645 paqr7a coding upstream 28192 13961396 ~ 13962469 (-)
XLOC_014646 NA coding upstream 128838 14062042 ~ 14066550 (-)
XLOC_014647 nr0b2b coding upstream 220282 14153486 ~ 14155781 (-)
XLOC_014648 tbxta coding upstream 254336 14187540 ~ 14191592 (-)
XLOC_014711 CR382300.3 misc upstream 5795486 19728690 ~ 19728755 (-)
XLOC_014636 NA non-coding downstream 734872 13185953 ~ 13188728 (-)
XLOC_014634 AL928820.1 non-coding downstream 1290337 12633149 ~ 12633263 (-)
XLOC_014632 NA non-coding downstream 1299638 12620926 ~ 12623962 (-)
XLOC_014657 NA non-coding upstream 2093689 16026893 ~ 16031105 (-)
XLOC_014658 CR385068.2 non-coding upstream 2094215 16027419 ~ 16027490 (-)
XLOC_014659 CR385068.1 non-coding upstream 2095252 16028456 ~ 16028590 (-)
XLOC_014660 CR385068.3 non-coding upstream 2096104 16029308 ~ 16029443 (-)

Expression


Co-expression Network