XLOC_014637 (zfpm2b)


Basic Information

Item Value
gene id XLOC_014637
gene name zfpm2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13193215 ~ 13286738 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028929
GCTCTACGGTGCACCGCTGCGCTCAAACCTCCTGCAACAAAAGCACAACACGCGCTCATCTGCGCTGTCAGTGTGCGCTCGGATCACAGCACAACTTAACCCTCTCCACGACGACACCAATAAACCCTGACTGGAATCAGACAGACACCGAAACACATCCGAGTCTTACAGACAGAGCGTTTATCTGTGTTTGGATGAATCGCGGTATCGTTTTTTAATCTCGAGTCCAGCGCGCGGAGCAGGAATGTCCCGGAGGAAACAGAGCAACCCAAAGCAGTTCAAACGAGTGTTTGAAAATGGGCTTGAGGCGGACTCTGAGGAGACGCTGTGTGAGAAGAAAGAGATTTTAAAAGAAGAAGACCAGTCTGTGGAGGACGACCCAATTTACTTCTCTGACCCAGAGAACGGCATCTCTAAAGATGGAGATCACTCGAGGAACGgtgaaatgggtggAAGTGTTAAGGTGGAGCAACAAGACAGTGACGGACAAGAAGAGAGAGTCCAGTCCAGCCCAGTGACAGCAGAAGAATGGGACGGCCCAAGGGAGTTGAAAATTGTCTGTGAAGGAGAAGAGAGAAAAATTTGTTCTTGTCAGGCCCTTTTACTGGGCACCACGTGGGGACCTTTTCCTGGCAAGATCGAGGCAACCACTGGAGGAAGTGACAAGGTTTCGCTGGTGTTGAATGGAGGTCCTCGCTGGCTGATGGACATCATGTGGGTCAGCGCTGAAGATGGAAAGAGCAACTGTGCTGTTTACAGTAAAGGAGGACATGTGTGGTGTTCCACAACCAAAAACATCATGGAAGGAGATGAGCTCGCAGCCTGTGTGGTGGATTTGCACTCTCATCTTCAAACCCCAGGCCCAAATCCCTATGGTCAAGGGATGTACCCGTCCCGACAGCTGGATGCCATCCAACTCCTTCCTCAGCAAGCGGCCATGGCATCCATACTGCCCGGCGCTATCATCAACAgtctCAAGTCTGATGAGGTGTCCACTGGAAGTAACTTGAAATGCACCATTTGCGACTACTCTGCTGAAACTCTCATGGTGCTCCAGCACCACATCCTCTCCCATCTGTCCCAAACCGGCCTGAGATGCGGTCAATGCCACTTCTCATTCCAAACCCCCAGAGAAATGGCCAAACACCAGGAGCTACATGGACATAATTGTACGGTCACCAATAAACCCATTAAAGAAGACAAAACTGATAACGCTCCTAACAGCATCACAAGTAACTCTCAACAGGTCAGAGCTAAGACGAACATCAATGACCTCCAGGAAAGCACAGCACAATGTGATGTTACTCAAATTTCAGATCTGCAAAACACGGACAGTAGCCAGAAATCCAATAAAGGCGAGGCAAACTCAGGAAACAAGGCCAACCTTTCATATTCCAGAGTCAAGTCAGAACCTTCTAGTCCTCGTTTAGCCTCTTCACCCATTCAGCACCACCTTCCTCCTGCATTTCCCTTACCCCCTTTTATACCGCATGTTCCGTTCTCACAGGATATTACTATGGGGCCGCAGGCATCTGAGATACTGGCCAAAATGTCTGAGTTAGTCCATCGCAGGTTGCGTCATGGTGGAAACTCTTACCCTCCGGTCATGTACAGTGCACTTGTACCAAAAGGAGCAACATGCTTCGAATGCAATATCACCTTCAATAACCTTGATAATTATTTGGTGCACAAGAAGCACTACTGCAACAGTCGTTGGGAAAACACGCACAAATCACATGACTTCTCTGGACTtctggataaaccagcaggcacTGTAAGCCCTAAAATTGGAGCCAGTTTGGCTGTTATGCTAAATGCCGGCCATCCCTCTGAAGTGAAAGGCCAAGAGCCTAAACCTTGCAATCCCATTGCAGGTGGAAAAGTAACAGATGAACTGACCGTTCAAGTTAAAAAAGCATCCACTCCATCTGGTGCACAGGAGAGACCAAATGGTACACAGCTGGATTTACAAAGCCAGAAAATGCCACCCACTGAAACTGACCCCAGCCACACAACATGCGAGGCCTGCAAGATCACCTTTAGTCGACATGAGACCTACATGGTGCACAAGCAGTATTACTGTGCCACTCGCCATGACCCTCAAATCAAACGGGCAAACAATAAAGGACCGGCTAATCAAAAGGCAGTACGTCCACGTAAAAGAAGAAAGGCATACGAGTTGGCCAATTCTGAGCAAGAACAAATGCCACCAATGGGTATGCCATCATTTCTTGGAATGCCCACTTTAGGAGGACCATACATGTCTAAGGACACACTGGATAGCTTCAGAGATCATCAGAGATACAACATGATTCAGGGGTTAGTGCCCAAATACCCAGAGGCTTCACTGACAGTTACGAAATCCGCTCTTGTGTCAAAGTGTAATATAATCTCAAAGGAAGAAACTGATGCACCCATAGATCTCAGTAAAAAATGTGTGCCACAGTTTGGTAACACTCCTGTTTCCCCTAAAGGACTAATGGATTATCATGAGTGTGTTGTGTGCAAGATAAGTTTCAACAAAGTTGAGGACTATCTGAAGCACAAGCAGAACTTCTGCCCGGGTACTATTTTGCAAAGTGCTTCCACTGAGAACAAAAGCATCAAAAAGGAAGTTCCCAGAAATACCAACAACCTCTTAGAGAACCCCCTCTTTGAATTTCCAGCTCCACAGATAAAGACTGAGCATCCAAATGCAGTGCCAACTTCTGATACCCAAGCTTCAAGTGAGGAACAATTAATCCCAACAAAAGATGACCTGAGGAACATGTTTCAAACCTCTTCAACCTACCCAAGTCCTGCTAAGAAAATGAGACCTGATGAGCAAATTTGGCCTTACTATGAAATCAAACCCACCGATTATGCTACAGGGATGCTGGTCTCACAAAGTGAAAGGAGACAGAGTCCAAACGAGGGCAGTGAGGGAGAAAAAGATCAGCCAATGCCTGACGGTAGCCATCTTAGCACAGATGACCCTGAGAACCAGAGCCAGTCCTCATCTCTAAAGGACAATGTTGAGATTGAGGAAAAGATGGAAGATGCTGAAAATAAACATGAATCCCCCACACCAGAGAGCCGTTTAGATGATCCCATCAACAGTAAGGATGTCACCACACAGATGCCATCTATAAAAACTGAGGAAGTCTCGACTAGCTTGAAGAAAGCGTTGACTGGGTCCATTGCCAACTCAAGTAATGTAAAGTACTGTCGCCCGTGTGACATCCAGTTCAACAATCTCTCAAATTTTATAACGCACAAGAAGTTTTACTGCTCATCTCAAACAGCAGAGCATGTCAAATAGTGGACAACTAGTCCACAGTTGTAGAAAATGTAGTGTTGGACTCAATCCACGTACATACTGTCAGCAGTGTAAAGATACATTTAGGGCCTCTTGTCACAGGACCCGAGAAAACATTGCCCGTTGTCCACCCTTGACAACTGCACTGCTCGAATCAGACATAATTTATTGCAATGGACACTTTCTCTAAACAATACCATCTGCCCTCTCGTCTTTCACAAGCCTTGAACCTGTCATTAATTTTCACAAGCACGTTTCTGCCCCCTTGTGGTCATCATAAGACGTTTTTACGATTCCATGCTGGTGTACTCAGCAGCAGGAGGACAATCAAAGCAGGATTAATCCTACCAGTCATTTATTAGAAACTTTGAAACTATTTGTTGAAAATACTGTGTgctgtttcttgtttttttatgtatttatttatttaataatagttGCAGCTCCAAAAAAGATCTGAAGTGAAAGACAAGCTAGTGAACGTTTCAAGATTGTGAAAGCAAGCCACATTGTAGAAACTGATTAAAAAGAAAAGTCTACAGATGGTGGGACTACCACTGGCTGATTATTGTTTATCCTTTGACTGGTATCCTTAAGACTGGCAATCATGTTTTCTGAATTAATAATTGTCGATACATGTAGAGTCTAGTTTGTCCTTGATGTTTCTTTATGCttcaaacctttttttcttgtcaatgcAGAACTCTTCTTAAAAAGGTGacctgtatgtgtgtttgttgatTCCttatctcttttttaaatatctggctTCTAATGCAatactttttaaaagataaatcaTTATTTAAAGCAGTATTACGAAAGGGTAACTTTTTTACTTGGACCCCAGAAATTCTGTGTGAAGTGTTTACGGAGGTCGTACAGAGAAGGGTTTACACTTGATATGAATAACTCACTGTAAACTTTCCTACAGAAAAATAATCTTGtcagaaaaaaagggaaaaaaaaagttgtcaataATGTGTTGCTATGCATGTACCTGTATGGAATGAAATTCCAGAAATGTgggaaatgttattttatgtggcataaaaattaaaattcttaTCTCAGGA
>TCONS_00028930
gagttgTGCTGCTGCAGCTCTACGGTGCACCGCTGCGCTCAAACCTCCTGCAACAAAAGCACAACACGCGCTCATCTGCGCTGTCAGTGTGCGCTCGGATCACAGCACAACTTAACCCTCTCCACGACGACACCAATAAACCCTGACTGGAATCAGACAGACACCGAAACACATCCGAGTCTTACAGACAGAGCGTTTATCTGTGTTTGGATGAATCGCGGTATCGTTTTTTAATCTCGAGTCCAGCGCGCGGAGCAGGAATGTCCCGGAGGAAACAGAGCAACCCAAAGCAGTTCAAACGAGTGTTTGAAAATGGGCTTGAGGCGGACTCTGAGGAGACGCTGTGTGAGAAGAAAGAGATTTTAAAAGAAGAAGACCAGTCTGTGGAGGACGACCCAATTTACTTCTCTGACCCAGAGAACGGCATCTCTAAAGATGGAGATCACTCGAGGAACGgtgaaatgggtggAAGTGTTAAGGTGGAGCAACAAGACAGTGACGGACAAGAAGAGAGAGTCCAGTCCAGCCCAGTGACAGCAGAAGAATGGGACGGCCCAAGGGAGTTGAAAATTGTCTGTGAAGGAGAAGAGAGAAAAATTTGTTCTTGTCAGGCCCTTTTACTGGGCACCACGTGGGGACCTTTTCCTGGCAAGATCGAGGCAACCACTGGAGGAAGTGACAAGGTTTCGCTGGTGTTGAATGGAGGTCCTCGCTGGCTGATGGACATCATGTGGGTCAGCGCTGAAGATGGAAAGAGCAACTGTGCTGTTTACAGTAAAGGAGGACATGTGTGGTGTTCCACAACCAAAAACATCATGGAAGGAGATGAGCTCGCAGCCTGTGTGGTGGATTTGCACTCTCATCTTCAAACCCCAGGCCCAAATCCCTATGGTCAAGGGATGTACCCGTCCCGACAGCTGGATGCCATCCAACTCCTTCCTCAGCAAGCGGCCATGGCATCCATACTGCCCGGCGCTATCATCAACAAAGACATCTTCCCCTGTAAGGCATGTGGCATCTGGTTTCGGAGTGAAAGAAACCTACAGGCTCATCTTATGTATTACTGCAGTGGGCGACAAAGGGACCCTGAGATGGTGGCAGAGAAAAACGCCAATATCAGCCATCAAATGCTCCGCAATTGCACATACCCCCAGTGCAATATGAGCTTTGCAGGCTCGCATGCCCTGGAAATGCACTTATCCACACATAACTgtctCAAGTCTGATGAGGTGTCCACTGGAAGTAACTTGAAATGCACCATTTGCGACTACTCTGCTGAAACTCTCATGGTGCTCCAGCACCACATCCTCTCCCATCTGTCCCAAACCGGCCTGAGATGCGGTCAATGCCACTTCTCATTCCAAACCCCCAGAGAAATGGCCAAACACCAGGAGCTACATGGACATAATTGTACGGTCACCAATAAACCCATTAAAGAAGACAAAACTGATAACGCTCCTAACAGCATCACAAGTAACTCTCAACAGGTCAGAGCTAAGACGAACATCAATGACCTCCAGGAAAGCACAGCACAATGTGATGTTACTCAAATTTCAGATCTGCAAAACACGGACAGTAGCCAGAAATCCAATAAAGGCGAGGCAAACTCAGGAAACAAGGCCAACCTTTCATATTCCAGAGTCAAGTCAGAACCTTCTAGTCCTCGTTTAGCCTCTTCACCCATTCAGCACCACCTTCCTCCTGCATTTCCCTTACCCCCTTTTATACCGCATGTTCCGTTCTCACAGGATATTACTATGGGGCCGCAGGCATCTGAGATACTGGCCAAAATGTCTGAGTTAGTCCATCGCAGGTTGCGTCATGGTGGAAACTCTTACCCTCCGGTCATGTACAGTGCACTTGTACCAAAAGGAGCAACATGCTTCGAATGCAATATCACCTTCAATAACCTTGATAATTATTTGGTGCACAAGAAGCACTACTGCAACAGTCGTTGGGAAAACACGCACAAATCACATGACTTCTCTGGACTtctggataaaccagcaggcacTGTAAGCCCTAAAATTGGAGCCAGTTTGGCTGTTATGCTAAATGCCGGCCATCCCTCTGAAGTGAAAGGCCAAGAGCCTAAACCTTGCAATCCCATTGCAGGTGGAAAAGTAACAGATGAACTGACCGTTCAAGTTAAAAAAGCATCCACTCCATCTGGTGCACAGGAGAGACCAAATGGTACACAGCTGGATTTACAAAGCCAGAAAATGCCACCCACTGAAACTGACCCCAGCCACACAACATGCGAGGCCTGCAAGATCACCTTTAGTCGACATGAGACCTACATGGTGCACAAGCAGTATTACTGTGCCACTCGCCATGACCCTCAAATCAAACGGGCAAACAATAAAGGACCGGCTAATCAAAAGGCAGTACGTCCACGTAAAAGAAGAAAGGCATACGAGTTGGCCAATTCTGAGCAAGAACAAATGCCACCAATGGGTATGCCATCATTTCTTGGAATGCCCACTTTAGGAGGACCATACATGTCTAAGGACACACTGGATAGCTTCAGAGATCATCAGAGATACAACATGATTCAGGGGTTAGTGCCCAAATACCCAGAGGCTTCACTGACAGTTACGAAATCCGCTCTTGTGTCAAAGTGTAATATAATCTCAAAGGAAGAAACTGATGCACCCATAGATCTCAGTAAAAAATGTGTGCCACAGTTTGGTAACACTCCTGTTTCCCCTAAAGGACTAATGGATTATCATGAGTGTGTTGTGTGCAAGATAAGTTTCAACAAAGTTGAGGACTATCTGAAGCACAAGCAGAACTTCTGCCCGGGTACTATTTTGCAAAGTGCTTCCACTGAGAACAAAAGCATCAAAAAGGAAGTTCCCAGAAATACCAACAACCTCTTAGAGAACCCCCTCTTTGAATTTCCAGCTCCACAGATAAAGACTGAGCATCCAAATGCAGTGCCAACTTCTGATACCCAAGCTTCAAGTGAGGAACAATTAATCCCAACAAAAGATGACCTGAGGAACATGTTTCAAACCTCTTCAACCTACCCAAGTCCTGCTAAGAAAATGAGACCTGATGAGCAAATTTGGCCTTACTATGAAATCAAACCCACCGATTATGCTACAGGGATGCTGGTCTCACAAAGTGAAAGGAGACAGAGTCCAAACGAGGGCAGTGAGGGAGAAAAAGATCAGCCAATGCCTGACGGTAGCCATCTTAGCACAGATGACCCTGAGAACCAGAGCCAGTCCTCATCTCTAAAGGACAATGTTGAGATTGAGGAAAAGATGGAAGATGCTGAAAATAAACATGAATCCCCCACACCAGAGAGCCGTTTAGATGATCCCATCAACAGTAAGGATGTCACCACACAGATGCCATCTATAAAAACTGAGGAAGTCTCGACTAGCTTGAAGAAAGCGTTGACTGGGTCCATTGCCAACTCAAGTAATGTAAAGTACTGTCGCCCGTGTGACATCCAGTTCAACAATCTCTCAAATTTTATAACGCACAAGAAGTTTTACTGCTCATCTCAAACAGCAGAGCATGTCAAATAGTGGACAACTAGTCCACAGTTGTAGAAAATGTAGTGTTGGACTCAATCCACGTACATACTGTCAGCAGTGTAAAGATACATTTAGGGCCTCTTGTCACAGGACCCGAGAAAACATTGCCCGTTGTCCACCCTTGACAACTGCA

Function

symbol description
zfpm2b Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Predicted to be involved in cell differentiation; heart development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in anterior lateral plate mesoderm; central nervous system; midbrain; and posterior lateral plate mesoderm. Human ortholog(s) of this gene implicated in 46,XY sex reversal 9; myelodysplastic syndrome; and tetralogy of Fallot. Orthologous to human ZFPM2 (zinc finger protein, FOG family member 2).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-5 Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Predicted to be involved in cell differentiation; heart development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in anterior lateral plate mesoderm; central nervous system; midbrain; and posterior lateral plate mesoderm. Human ortholog(s) of this gene implicated in 46,XY sex reversal 9; myelodysplastic syndrome; and tetralogy of Fallot. Orthologous to human ZFPM2 (zinc finger protein, FOG family member 2).

Ensembl:

ensembl_id ENSDARG00000100560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028929 False 4374 mRNA 0.44 7 13193215 13286722
TCONS_00028930 True 3684 mRNA 0.47 8 13194146 13286738

Neighbor

gene id symbol gene type direction distance location
XLOC_014636 NA coding downstream 4487 13185953 ~ 13188728 (-)
XLOC_014635 slc25a32a coding downstream 183800 12937066 ~ 13009415 (-)
XLOC_014633 fam210aa coding downstream 544807 12630414 ~ 12648408 (-)
XLOC_014634 AL928820.1 coding downstream 559952 12633149 ~ 12633263 (-)
XLOC_014632 NA coding downstream 569253 12620926 ~ 12623962 (-)
XLOC_014638 CR450687.1 coding upstream 77798 13364536 ~ 13370153 (-)
XLOC_014639 NA coding upstream 166120 13452858 ~ 13456995 (-)
XLOC_014640 epb41a coding upstream 352748 13639486 ~ 13774502 (-)
XLOC_014641 ccn2b coding upstream 516417 13803155 ~ 13808632 (-)
XLOC_014642 stx12 coding upstream 618330 13905068 ~ 13923104 (-)
XLOC_014711 CR382300.3 misc upstream 6441952 19728690 ~ 19728755 (-)
XLOC_014626 CU468824.1 non-coding downstream 1056344 12136736 ~ 12136871 (-)
XLOC_014625 CU468682.1 non-coding downstream 1062035 12131045 ~ 12131180 (-)
XLOC_014646 NA non-coding upstream 775304 14062042 ~ 14066550 (-)
XLOC_014657 NA non-coding upstream 2740155 16026893 ~ 16031105 (-)
XLOC_014658 CR385068.2 non-coding upstream 2740681 16027419 ~ 16027490 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_01018345_01040605 ZFPM2B coding CI01000320 null 1017163 ~ 1041214 (+)