CI01000320_01018345_01040605 (ZFPM2B)


Basic Information

Item Value
gene id CI01000320_01018345_01040605
gene name ZFPM2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1017163 ~ 1041214 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_01018345_01040605.mRNA
CTATAAATGTACATATAAAAAGGTTCTGTGTGCAGTGCACAGTACTGAAGTGTACATTACTTACACATATTCATACCGCAGGTCTTTTACTCCTTCAGGATTTCTTTCAAATGGCACTCGGTAGAGTTGTTTCATCTGTATGTGATGTTTTTTAAGGATTCGCTCCAGTGTTGCTAGAGAGACCTGATGGACATTATTGAAAACTGTGTGGTCATTCAGGATGTTTGTTTGAATTTACTCTGAGATGTATCGCATTACTGGCCAAAACCATGGTTACGATAGCTCTCTCTTGTTCTTCTGTGAATATTCCTTCCTCCTTTAAGTTCTCGACCTTCAATGCTATGTAGACCAATCAAAATACAAGTTAAAGGGTTAGTTTACTTTCAAATGAAATTTACCCCAAGCTTTACTCACCCTCAAGCCATCCTAGGTGTATGTGTTCATCAGAAAGAAGAAAGTCATAATCGGAGATATATTAATAAATATTAATTAAAGCTTTATACTGGCAGTGAGCGAGACCAGCGAGTATGAATCTGAAGAAAGTGCCTCCATCCACATCCATCCATCCATCATAAACGTATTCCACATGGATCTGGGGAGTTAATAAAGGCCTTCTGAAGCGATGCGTTAGTGTAAAAAAAAAGTATCCATTTTAACAAGTTATGAAGTAAAATATCTAGCTTCCGCCAGACTGCCTTCCGTATTCAACTTACGAAAAAACAAAACTGGTGTCATGTCATTTAAGCTTTTTCTGTAAGTTGAATAAGGAAAGCGTAAGATGTAGTGTAAACGTTTTGAACTGCGAGAGGCATTATGCTTTCTTCGTAAGTTGAATATGGAAGGTGGTCTGGCAGAAGCTAGATATTTTACTTCATAACTTGTTAAATATGGATTTTTTTTTTTTTTTTTTTTTACCCAAACACATTGCTTCACTTCAGAAGGCCTTTATTAACCCCCCAGAGCCGTGTGGGGTAAGTTTATTATGGATGGATGTGTATGGTGGATCTTCAGCTTCATACTCGTTGGTCTCGCTCACTGCCATTATAAAGCTTGGACGCGCCAGGATGTTTATTATCTCCGATTTTGTGTTCATCAGAAAGAAGAAAGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAAGCTTGGGGTAATTTTCATTTGAAAGTGAACTAATCCCTCAATGTCACAGGACAGGACACAAGACATTGTTTCAAACATGGAATACAGTGAATGGGTACCAAAAAGTACTGATGTTTCGCTGATGTTGAGTGGAGGTCCTCGCTGGCTGATGGACATGATGTGGGTCAGTGCAGAGGATGGAAAGAGCAACTGCGCTGTTTACAGTAAAGGAGGACATGTATGGTGTTCCACAACAAAAAACATCATGGAGGGAGACGAACTTGCAGCCTGTGTGGTGGATTTGCATGCGCATCTTCAAACACCAGCTCAAACTCCCTACGGTCAAGGGATGTACCCGGCCCGACAGCTGGACAGCATCCAACTCCTTCCTCAGCAAGCTGCCATGGCGTCCATACTGCCCGGCGCTATCATAAACAAAGACATCTTCCCCTGTAAGGCATGTGGCATCTGGTTTCGGAGTGAAAGAAACCTCCAGGCCCACCTTATGTATTACTGCAGTGGGCGACAAAGGGACCCTGAGATGGTGGCAGAGAAAAACGCCAATATCAGCCATCAAATGCTCCGCAATTGCACATACCCACAATGCAATATGAGCTTTGCAGGCTCACATGCCCTGGAAATGCACTTATCAACACATAACTCTCTCAAGTCAGATGAGATATCGACTGGAAGCAACTTGAAATGCACAATTTGTGACTACACTGCTGAAACTCTTATGGTACTCCAACACCACATCCTCTCCCATCTGTCCCAAACCGGCCTGAGATGTGGTCACTGCCACTTCACTTTCCAAACCCCCAGAGCACTGGCTAAACATCAGGAACTACATGGACATAGCTGTACGGTCAACAAACTCATCAAAGAAGACAAAGCTGATAACTCTCCTAGCAGCATTGCAGGCAGCCCTCAGCAAGTCAGAGCTAACGCAAACATAAAAGACCTTCAGGAAAGAACAGTAAAGCATGATATAAGTCAAATTTCAGAGCTGGAAAGCACAGAAAGTAGCCAGACATCCACTAAGGGTGAGGGGAACTCAGGAAACAAGGCTAGTGTTTCATACTCCAGAGTAAAGTCAGAACCTTCTAGTCCACGTTTAGCCTCCTCACCCATTCAGCACCACCTCCATCCTGCCTTTCCCATACCCCCTTTCATACCACATGTCCCATTCTCACAGGATATTACGGTGGGCCCACAGGCATCTGAGATACTGGCCAAAATGTCTGAGCTGGTCCATCGACGGTTACGTCATGGGGGAAACTCTTACCCTCCAGTCATGTACAGCACACTTGTGCCAAAAGGAGCAACATGCTTTGAATGCAATATCACCTTCAACAACCTTGATAATTATTTGGTGCACAAGAAGCACTACTGCAACACTCGCTGGGAAAACACACACAAGCCACATGACTTCCCTGGACTTCTGGATAAACCAGCAGGCACTGTAAGCCCTAAAATCGGAGCCAGTTTGGCTGTTATGCTAAATGCCGGCCATCCCTCTGAAGTGAAAGGGCCTGAGTCTAACCCTTGCAATCCCATTGCAGGTGGAAAAGTGACAGATGAACTGTCCGTGCAAGTTAAAAAAGCGTCAACTCCATCGGGTGCACAGGAGAGGCCAAATGGTACACAGCTGGATTTACAAAGCCAGAAATTGCCACCAACTGAAACTGACCCCAACCACACAACATGTGAAGCCTGCAAAATCACCTTTAGTCGACATGAGACCTACATGGTGCACAAGCAATATTACTGTGCCACTCGGCATGATCCTCAAGTGAAACGTGCAAACAATAAAGGAGTAGCGAATCAGAAGTCAGTACGTCCACGTAAAAGAAGAAAGGCATATGAGCTGGCCGCTCCTGAACAAGAACAAATGCCACCCATGGGTATACCATCATTTCTTGGAATGCCCACTATTGGAGGTCCATACTTATCAAAGGACACACTGGATAGCTTTAGGGACCATCAGAGATACAACATGATCCAGGGGTTAGTACCCAAATATCCAGAGGCTTCATTGACAGTTACAAAATCAGCTATTGTGTCAAAATGTAATACAATCTCTAAGGAAGAAGGTGATGCACCAATAGATCTCAGTAAAAAATGCATGCCACAGTTTGGCAACACTTCGGTTTCCCCTAAAGGACTTATGGATTACCATGAGTGTGTCGTGTGCAAGATAAGCTTTAACAAAGTTGAGGACTATCTTAAGCACAAACAGAACTTCTGTCCAGGTACTATTTTGCAAAATGCTTCCACTGAGAACAAAATCATCAAAAAAGAAGGTCCTAGAAATACCAACAATCTCTTAGAGAACACTCTCTTTGAGCTCCCAGCTCTGCATGGAAAGACTGAGCATCCAAATGCAGCAACAAGTTCTGACATCCAGGCTTCCAGTGAGGAACAACTAATGCCAATAAAAGATGACCTGAGGAGTGTGTTTCAACCCACTGGGGGTTACCCAAGTCCTGTTAAGAAAATGAGACCTGATGAGCAAATTTGGCCTTACTATGAAATCAAACCCACTGATTATGCTACAGGGATGCTGGTCTCACAAAGTGAACGGAGGCAGAGTCCAAATGAGGGCAGTGAAGGAGAGAAAGACCAGCCGATGCCTGATGGTAGCCATCTTAGCACAGATGACCCTGAGAGCCAGAACAAGTGCTCATCCTTAAAGGACAGTCTTAAATTTGAGGACAAGATGGAAGATGCTGGAACTAAACAACATGGTTCCGCTACACCAGACAGCCATGTAGACAGTTCAAACAGCTATAAGGAAAGCACAACGCTGATGCCATCTCCAAAGACTGAGGAAGTCTCGACAAGCTTCAAGAGAATGTTGAGTGGGTCCACTGCCAGTAATGTAAAGTACTGCCGCCCATGTGACATCCAGTTCAACAACCTCTCAAACTTTATAACACACAAGAAGTTTTACTGCTCGTCACACACAGCGGAGCACGTTAAATAGTGAACCTGCCCCTTGTCTTAAATCTAGTTCACAGTAGTAGAAAAGGTAACACTGTTAATGAGCGTTGCCTCTTGAATTCACATGGGACCCAACCCCCAGGCACTTAAGCAGTGTAAAGACACGTTTAGGCCCCCCAGGACCCAGGACAACATTCCCAGTTGTAGCCACTTGACATCAGCCCTGCTGTTTTGAATCTGACACCATTTGCTTGCACTGGACACTTGCTTGGCTATCATTTGTGAAGACTAGTGACAATATGCCCCTTCTTCTATAAGTGGACACAAGCCTTGAACCAGTCATATTAGATTTTTCACAAGCACTGTTTTTTCCCCTTGTAGTCAGCAACATGAGACATTTTTACAATTCCATGCTGGTGTACTCATCAGCAGGAGGACAATCAAATCAGGAGATTTATCCTACCAGTCATTTATTAGAAACTTTTAAAATATTTGTTGGGAATATTCTGTGTTGATAGTTTTGTGTGTGTGTTTTTTATGTATTTATTTATTTAATAATAGTTGCAGCTCTAAAAAGATGCAGATCTGAAATGAAAAACAAGTTTATGAAAGTTTTAGAATTACAAAAAGGCACATGAATTGTAGAAATTGA

Function

symbol description
zfpm2b Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Predicted to be involved in cell differentiation; heart development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in anterior lateral plate mesoderm; central nervous system; midbrain; and posterior lateral plate mesoderm. Human ortholog(s) of this gene implicated in 46,XY sex reversal 9; myelodysplastic syndrome; and tetralogy of Fallot. Orthologous to human ZFPM2 (zinc finger protein, FOG family member 2).

NR:

description
Zfpm2a protein

GO:

id name namespace
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_01018345_01040605.mRNA True 4716 mRNA 0.43 5 1017163 1041214

Neighbor

gene id symbol gene type direction distance location
CI01000320_00998626_01009523 NA coding upstream 6573 998626 ~ 1010590 (+)
CI01000320_00915850_00922116 NA coding upstream 94877 913093 ~ 922286 (+)
CI01000320_00833426_00905113 NA coding upstream 111471 833369 ~ 905692 (+)
CI01000320_00783563_00803806 NA coding upstream 212808 783563 ~ 804355 (+)
CI01000320_00735525_00742322 CTHRC1, CTHRC1A coding upstream 274279 734864 ~ 742884 (+)
CI01000320_01050034_01055863 SRSF4 coding downstream 8541 1049755 ~ 1056107 (+)
CI01000320_01062113_01063824 NA coding downstream 20719 1061933 ~ 1064327 (+)
CI01000320_01366265_01378718 TMEM222 coding downstream 325051 1366265 ~ 1378933 (+)
CI01000320_01392029_01394001 TPBGL coding downstream 350759 1391973 ~ 1394253 (+)
CI01000320_01410702_01413113 NA coding downstream 368945 1410159 ~ 1414065 (+)
G454188 NA non-coding upstream 16358 1000478 ~ 1000805 (+)
G454187 NA non-coding upstream 17137 999708 ~ 1000026 (+)
G454183 NA non-coding upstream 25368 991574 ~ 991795 (+)
G454179 NA non-coding upstream 28614 988292 ~ 988549 (+)
G454174 NA non-coding upstream 38348 978585 ~ 978815 (+)
G454161 NA non-coding downstream 42424 1083638 ~ 1084062 (+)
G454197 NA non-coding downstream 70361 1111575 ~ 1111919 (+)
G454202 NA non-coding downstream 80974 1122188 ~ 1123504 (+)
G454213 NA non-coding downstream 91286 1132500 ~ 1132817 (+)
G454220 NA non-coding downstream 100951 1142165 ~ 1142491 (+)
G454251 NA other downstream 173364 1214578 ~ 1215032 (+)
G455129 NA other downstream 1149103 2190317 ~ 2197008 (+)
G455393 NA other downstream 2058610 3099824 ~ 3100289 (+)
CI01000320_03117532_03169741 NA other downstream 2076333 3115820 ~ 3169749 (+)
G455404 NA other downstream 2079602 3120816 ~ 3121105 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014637 zfpm2b coding NC_007130.7 CM002903.2 13193215 ~ 13286738 (-)