XLOC_014631 (ftr56)


Basic Information

Item Value
gene id XLOC_014631
gene name ftr56
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12398544 ~ 12404590 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028922
tgctttaaataaaaacaccATGCTGGCTGAAGTGGTGGAGCAACTGAAGAAGACAAAACATCACACTGCTGCTGTTCCTGCTGGAGATGGAGACGTGGAGTGTGACAGCTGTACTGGAAGAAAACACAAAGCCATCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCAAAATCATCTTGAACAACATGAGAATCTCTTCAAAGGTAAAAGACACAACCTAATAGACGCTACTGGACGGCTTCAGGAGATGATCTGCCGTAAACATGATAAACTCCTAGAAATTTACTGCCGTACAGACCAGAGGTGTATTTGTATGCTCTGTATGGTGGATGAACACAAAGATCATGAAACTGTATCAACTTCAGCAGAGAGGACAGAGAAACAGAAACAATTAGGAGAGATACAGAGAAAATTCCAGCAGCAAATCCAGAAAAGAGAGAGGAAGCTTCAAGAGCTAAATGAAGCTGTGAAGATTCATGAGCGCTCTGCACAGACAGCAGTGAAGGACAGTGAGAGGGTCTTTTCTGAACTCATCCGCTCCATTGAGAGAAAACGCTCTGAGGTCACACAGATGATCAGAGATCAAGAAAAGATCACAGTCGGTCGAGCTGAAGGACTCTTGAAGCAACTGCAGCAGGAGATTGATGATCTGAGAGGGAAGAACGCTAAGCTGGAGcagctttcacacacacacgATCACATCTGTTTCATCCAGGTGACACTAATCTTTACATCACCAAGTGTTTTTACTCATATTGCATCTGTTGACCATTGAATAGCAtacgtttttttatttaaattaagttatactTTAGTTTTCCTTTTAGTTGTTTGACTGTCTTTGTAGAGTTTCGCATCTCTCCCTGTTCCTCCTGCATCTCCTGATGTCCCCAGCATTACTGTTAGTTCTTATGATGATGTAGGAAAATCTGTCTCTCAACTGAGACAGAAACTGGAGGATTTCTGCAGAGAGGAGACTGAAAACATATCTGGTCAAGTGACATGCATCCAGATCATTCCCACTCCAGAATATGAGAGCAGGAATGACTTCCTACAATatTTCTGTCATTTCTccctggatccaaacacagctcatcaatgtctctgtctgtctgagaGGAGCAGAGTAGTGACCTTATCTAGCAGACAGAATTATCCTGATCATTTAGACAGATTTGATCAGTGTCGTCAGGTGCTGTGCAGAGAGAGTGTTTGTGGACGCTGCTACTGGGAGGTGGAGTGGAGTGGGAATGTAGATATTTCAGTGTCATATAAAAGCATCAGCAGAAAGGGAGAGGGTGACGTTCAGTGTAGATTTGGATGTAAtgatcagtcctggagtttgtctTGCTCCCGCTCCAGTTGTTCATTCAGACACAATGACATAAAGACTGATCTCGCTGTAGTGCCCGGCAATAGAATAGGAGTgtatgtggatcacagtgcaggaattCTGTCCTTCTACAGTGTTTCTGACACAATGACCCTCATCCACAGAGTCCACACCAGATTCACTCAGCCCCTCTATCCTGGCTTTAGatttttacatgtatttgttggtattttaaaacaagttttagataatTTTTCAGGTGAAACTGCAAGAGTTAAACTGTGTGACAGATAGATGGTCAAAGTGATTATTTCTTCAATACAGTAATTCGGCtaatataataaattgtattttaattcttAATGCAAAACATTTGATTGGATCCGATACAGATGAATGCATTTGAGAAGTTTGTGAGGTAACTATTTTCTCATTTGATCATCTTTTCATTACAGTCTGATCTGTATATTATTGATCTTCTGTTATACAAAAATGTATGCATGTCATGAGATTAATGCCTACGTAAAGCCGTAATGCCTATACTGAAGTCAAAATTGAAACAATGGAcaaaaaacattgacaaaaatggacaaaaagacaaaatatatataataaaacaagttTGCTTTGGTAATGTAAATGAAAATTGGAAAATCTGCTTCCACTCTTGACTGGCGTTCCTTCTACATCAGGTTGATTGTGCAGAAAttaataatgtgtgtatttaaaaCAGATACATTCAGTTGATTAAAATGCTGTCTGGACACAGTAGACATCCTA
>TCONS_00028923
ATAAATCTCAGAACCAGGAAATCACATCTACACTTCTGGGAAAACAAAACTTAAGTGCGGATTATTTGTGTTGTGTCTGCGGTAAAATGGCTGAATCCAGGTTTTCTCAGGAGCAGTTCAGCTGTCCAGTGTGTTTGGAGCTCTTGAAGAATCCAGTGGCCATTCCATGTGGACACAGTTACTGTATGAGCTGCATTACCGACTACTGGCATCACGAGGATGAGAAGAGAGTTTATAGCTGCCCTCAGTGCAGACAGACCTTCAGTCCAAGACctgctttaaataaaaacaccATGCTGGCTGAAGTGGTGGAGCAACTGAAGAAGACAAAACATCACACTGCTGCTGTTCCTGCTGGAGATGGAGACGTGGAGTGTGACAGCTGTACTGGAAGAAAACACAAAGCCATCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCAAAATCATCTTGAACAACATGAGAATCTCTTCAAAGGTAAAAGACACAACCTAATAGACGCTACTGGACGGCTTCAGGAGATGATCTGCCGTAAACATGATAAACTCCTAGAAATTTACTGCCGTACAGACCAGAGGTGTATTTGTATGCTCTGTATGGTGGATGAACACAAAGATCATGAAACTGTATCAACTTCAGCAGAGAGGACAGAGAAACAGAAACAATTAGGAGAGATACAGAGAAAATTCCAGCAGCAAATCCAGAAAAGAGAGAGGAAGCTTCAAGAGCTAAATGAAGCTGTGAAGATTCATGAGCGCTCTGCACAGACAGCAGTGAAGGACAGTGAGAGGGTCTTTTCTGAACTCATCCGCTCCATTGAGAGAAAACGCTCTGAGGTCACACAGATGATCAGAGATCAAGAAAAGATCACAGTCGGTCGAGCTGAAGGACTCTTGAAGCAACTGCAGCAGGAGATTGATGATCTGAGAGGGAAGAACGCTAAGCTGGAGcagctttcacacacacacgATCACATCTGTTTCATCCAGAGTTTCGCATCTCTCCCTGTTCCTCCTGCATCTCCTGATGTCCCCAGCATTACTGTTAGTTCTTATGATGATGTAGGAAAATCTGTCTCTCAACTGAGACAGAAACTGGAGGATTTCTGCAGAGAGGAGACTGAAAACATATCTGGTCAAGTGACATGCATCCAGATCATTCCCACTCCAGAATATGAGAGCAGGAATGACTTCCTACAATatTTCTGTCATTTCTccctggatccaaacacagctcatcaatgtctctgtctgtctgagaGGAGCAGAGTAGTGACCTTATCTAGCAGACAGAATTATCCTGATCATTTAGACAGATTTGATCAGTGTCGTCAGGTGCTGTGCAGAGAGAGTGTTTGTGGACGCTGCTACTGGGAGGTGGAGTGGAGTGGGAATGTAGATATTTCAGTGTCATATAAAAGCATCAGCAGAAAGGGAGAGGGTGACGTTCAGTGTAGATTTGGATGTAAtgatcagtcctggagtttgtctTGCTCCCGCTCCAGTTGTTCATTCAGACACAATGACATAAAGACTGATCTCGCTGTAGTGCCCGGCAATAGAATAGGAGTgtatgtggatcacagtgcaggaattCTGTCCTTCTACAGTGTTTCTGACACAATGACCCTCATCCACAGAGTCCACACCAGATTCACTCAGCCCCTCTATCCTGGCTTTAGatttttacatgtatttgttggtattttaaaacaagttttagataatTTTTCAGGTGAAACTGCAAGAGTTAAACTGTGTGACAGATAGATGGTCAAAGTGATTATTTCTTCAATACAGTAATTCGGCtaatataataaattgtattttaattcttAATGCAAAACATTTGATTGGATCCGATACAGATGAATGCATTTGAGAAGTTTGTGAGGTAACTATTTTCTCATTTGATCATCTTTTCATTACAGTCTGATCTGTATATTATTGATCTTCTGTTATACAAAAATGTATGCATGTCATGAGATTAATGCCTACGTAAAGCCGTAATGCCTATACTGAAGTCAAAATTGAAACAATGGAcaaaaaacattgacaaaaatggacaaaaagacaaaatatatataataaaacaagttTGCTTTGGTAATGTAAATGAAAATTGGAAAATCTGCTTCCACTCTTGACTGGCGTTCCTTCTACATCAGGTTGATTGTGCAGAAAttaataatgtgtgtatttaaaaCAGATACATTCAGTTGATTAAAATGCTGTCTGGACACAGTA

Function

symbol description
ftr56 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0031638 zymogen activation biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0046872 metal ion binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2801 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000030954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028922 False 2116 lncRNA 0.40 5 12398544 12404316
TCONS_00028923 True 2249 mRNA 0.41 6 12398553 12404590

Neighbor

gene id symbol gene type direction distance location
XLOC_014630 ptpn2b coding downstream 5725 12362787 ~ 12392819 (-)
XLOC_014629 ncaldb coding downstream 74030 12297100 ~ 12324514 (-)
XLOC_014628 znf706 coding downstream 185748 12206158 ~ 12212796 (-)
XLOC_014627 ywhaz coding downstream 204922 12164428 ~ 12193622 (-)
XLOC_014626 CU468824.1 coding downstream 261673 12136736 ~ 12136871 (-)
XLOC_014632 NA coding upstream 216336 12620926 ~ 12623962 (-)
XLOC_014633 fam210aa coding upstream 225824 12630414 ~ 12648408 (-)
XLOC_014634 AL928820.1 coding upstream 228559 12633149 ~ 12633263 (-)
XLOC_014635 slc25a32a coding upstream 532476 12937066 ~ 13009415 (-)
XLOC_014636 NA coding upstream 781363 13185953 ~ 13188728 (-)
XLOC_014711 CR382300.3 misc upstream 7324100 19728690 ~ 19728755 (-)
XLOC_014625 CU468682.1 non-coding downstream 267364 12131045 ~ 12131180 (-)
XLOC_014623 FP236813.1 non-coding downstream 351974 12046454 ~ 12046570 (-)
XLOC_014620 CR548625.1 non-coding downstream 672913 11725496 ~ 11725631 (-)
XLOC_014612 NA non-coding downstream 1170976 11219761 ~ 11227568 (-)
XLOC_014638 CR450687.1 non-coding upstream 959946 13364536 ~ 13370153 (-)
XLOC_014639 NA non-coding upstream 1048268 13452858 ~ 13456995 (-)

Expression


Co-expression Network