RNA id: TCONS_00028922


Basic Information

Item Value
RNA id TCONS_00028922
length 2116
lncRNA type retained_intron
GC content 0.40
exon number 5
gene id XLOC_014631
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12398544 ~ 12404590 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgctttaaataaaaacaccATGCTGGCTGAAGTGGTGGAGCAACTGAAGAAGACAAAACATCACACTGCTGCTGTTCCTGCTGGAGATGGAGACGTGGAGTGTGACAGCTGTACTGGAAGAAAACACAAAGCCATCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCAAAATCATCTTGAACAACATGAGAATCTCTTCAAAGGTAAAAGACACAACCTAATAGACGCTACTGGACGGCTTCAGGAGATGATCTGCCGTAAACATGATAAACTCCTAGAAATTTACTGCCGTACAGACCAGAGGTGTATTTGTATGCTCTGTATGGTGGATGAACACAAAGATCATGAAACTGTATCAACTTCAGCAGAGAGGACAGAGAAACAGAAACAATTAGGAGAGATACAGAGAAAATTCCAGCAGCAAATCCAGAAAAGAGAGAGGAAGCTTCAAGAGCTAAATGAAGCTGTGAAGATTCATGAGCGCTCTGCACAGACAGCAGTGAAGGACAGTGAGAGGGTCTTTTCTGAACTCATCCGCTCCATTGAGAGAAAACGCTCTGAGGTCACACAGATGATCAGAGATCAAGAAAAGATCACAGTCGGTCGAGCTGAAGGACTCTTGAAGCAACTGCAGCAGGAGATTGATGATCTGAGAGGGAAGAACGCTAAGCTGGAGcagctttcacacacacacgATCACATCTGTTTCATCCAGGTGACACTAATCTTTACATCACCAAGTGTTTTTACTCATATTGCATCTGTTGACCATTGAATAGCAtacgtttttttatttaaattaagttatactTTAGTTTTCCTTTTAGTTGTTTGACTGTCTTTGTAGAGTTTCGCATCTCTCCCTGTTCCTCCTGCATCTCCTGATGTCCCCAGCATTACTGTTAGTTCTTATGATGATGTAGGAAAATCTGTCTCTCAACTGAGACAGAAACTGGAGGATTTCTGCAGAGAGGAGACTGAAAACATATCTGGTCAAGTGACATGCATCCAGATCATTCCCACTCCAGAATATGAGAGCAGGAATGACTTCCTACAATatTTCTGTCATTTCTccctggatccaaacacagctcatcaatgtctctgtctgtctgagaGGAGCAGAGTAGTGACCTTATCTAGCAGACAGAATTATCCTGATCATTTAGACAGATTTGATCAGTGTCGTCAGGTGCTGTGCAGAGAGAGTGTTTGTGGACGCTGCTACTGGGAGGTGGAGTGGAGTGGGAATGTAGATATTTCAGTGTCATATAAAAGCATCAGCAGAAAGGGAGAGGGTGACGTTCAGTGTAGATTTGGATGTAAtgatcagtcctggagtttgtctTGCTCCCGCTCCAGTTGTTCATTCAGACACAATGACATAAAGACTGATCTCGCTGTAGTGCCCGGCAATAGAATAGGAGTgtatgtggatcacagtgcaggaattCTGTCCTTCTACAGTGTTTCTGACACAATGACCCTCATCCACAGAGTCCACACCAGATTCACTCAGCCCCTCTATCCTGGCTTTAGatttttacatgtatttgttggtattttaaaacaagttttagataatTTTTCAGGTGAAACTGCAAGAGTTAAACTGTGTGACAGATAGATGGTCAAAGTGATTATTTCTTCAATACAGTAATTCGGCtaatataataaattgtattttaattcttAATGCAAAACATTTGATTGGATCCGATACAGATGAATGCATTTGAGAAGTTTGTGAGGTAACTATTTTCTCATTTGATCATCTTTTCATTACAGTCTGATCTGTATATTATTGATCTTCTGTTATACAAAAATGTATGCATGTCATGAGATTAATGCCTACGTAAAGCCGTAATGCCTATACTGAAGTCAAAATTGAAACAATGGAcaaaaaacattgacaaaaatggacaaaaagacaaaatatatataataaaacaagttTGCTTTGGTAATGTAAATGAAAATTGGAAAATCTGCTTCCACTCTTGACTGGCGTTCCTTCTACATCAGGTTGATTGTGCAGAAAttaataatgtgtgtatttaaaaCAGATACATTCAGTTGATTAAAATGCTGTCTGGACACAGTAGACATCCTA

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0031638 zymogen activation biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0046872 metal ion binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2801 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDART00000151586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028909 lncRNA downstream 259805 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00030168 lncRNA downstream 1170976 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 1521714 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 1533745 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 1538095 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00030169 lncRNA upstream 216610 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 562703 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00030171 lncRNA upstream 562703 12967019 ~ 13009415 (-) True XLOC_014635
TCONS_00030172 lncRNA upstream 781637 13185953 ~ 13188728 (-) True XLOC_014636
TCONS_00028931 lncRNA upstream 960220 13364536 ~ 13365511 (-) False XLOC_014638
TCONS_00028920 mRNA downstream 5725 12362787 ~ 12392819 (-) False XLOC_014630
TCONS_00028917 mRNA downstream 74030 12297100 ~ 12324514 (-) False XLOC_014629
TCONS_00028918 mRNA downstream 76188 12297233 ~ 12322356 (-) False XLOC_014629
TCONS_00028919 mRNA downstream 82851 12297730 ~ 12315693 (-) True XLOC_014629
TCONS_00028914 mRNA downstream 185748 12206158 ~ 12212796 (-) False XLOC_014628
TCONS_00028924 mRNA upstream 226098 12630414 ~ 12648408 (-) False XLOC_014633
TCONS_00028925 mRNA upstream 227821 12632137 ~ 12648122 (-) True XLOC_014633
TCONS_00028927 mRNA upstream 532750 12937066 ~ 12965020 (-) False XLOC_014635
TCONS_00028928 mRNA upstream 553584 12957900 ~ 12967986 (-) False XLOC_014635
TCONS_00028929 mRNA upstream 788899 13193215 ~ 13286722 (-) False XLOC_014637
TCONS_00028921 other downstream 5786 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028910 other downstream 252779 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other downstream 261673 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028907 other downstream 267364 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028905 other downstream 351974 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028926 other upstream 228833 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028935 other upstream 1328852 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028954 other upstream 2770527 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 3623103 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 3624140 16028456 ~ 16028590 (-) True XLOC_014659

Expression Profile

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