RNA id: TCONS_00028935


Basic Information

Item Value
RNA id TCONS_00028935
length 746
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_014640
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13639486 ~ 13774502 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACACCGTTTTAAAAAAGGTTGGATAATTTTGTACATGGGATTGCCTGGGTGAAATCTGCGGAAAACCCCTTTCAGGATATTTTACAGTGGACTATTTCTACCCGTTGATGAATTAAAGGGAAAGTATCTGCCATGACGACAGACGAGGCGGAGAGCGTTCATAAGAAGCAAGTGTGTGAGCAGCAGCAGGAAGAGGAGGACCCCGCTGCACAGGAGCCAGCCCCCCCTGACACAGCTCAGGAAAGCCCCTCCGGCACCTCGCTGCCCCCTGGGGGCTCGGAGGAGGAACAGCAGCTAAAGCCCCGTCAGCGCACCTCCGCTGGCCGTGGCCTCTCCCGCCTTTTCTCCTCCTTCCTGAAGCGCCGTTCACAGTGCTCGGAGGGCGAGGGGGTGGAGACGGAGAGGGCCCGCGAGAAGGAGAACCAGGACGAACCCAAAGCTCCTATAGCAGACCCTGAGCCAGAATTGCGCATAGAGGGCGATGTTGCTCTAGACCAGCACTCAATCAGCAGTGCTGAAAACCAGCAGAATCCCCAATGAACGCCATCAGGTGAACATTCCTATGTCTTCTCCAGCACCTAcagttgtcagaattattagcccccctttgtatttttttgttcttttttaaatgtttcccaaatcatgttcacagtatgtctgataatatttttttttttctggagaaagtcttatttgttttattacggccacaataaaagcagttattaattttttaaaagc

Function

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-81 Predicted to enable actin binding activity; calmodulin binding activity; and structural molecule activity. Predicted to be involved in actomyosin structure organization. Predicted to act upstream of or within cell division and cortical actin cytoskeleton organization. Predicted to be located in cell cortex and nucleus. Predicted to be active in cytoskeleton and plasma membrane. Human ortholog(s) of this gene implicated in hereditary elliptocytosis. Orthologous to human EPB41 (erythrocyte membrane protein band 4.1).

Ensembl:

ensembl_id ENSDART00000171099

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030176 lncRNA downstream 276173 13452858 ~ 13456995 (-) False XLOC_014639
TCONS_00029758 lncRNA downstream 276173 13452858 ~ 13456995 (-) False XLOC_014639
TCONS_00030175 lncRNA downstream 276270 13452858 ~ 13456898 (-) False XLOC_014639
TCONS_00029759 lncRNA downstream 276521 13454968 ~ 13456647 (-) True XLOC_014639
TCONS_00030173 lncRNA downstream 363015 13364785 ~ 13370153 (-) False XLOC_014638
TCONS_00028940 lncRNA upstream 144538 13919007 ~ 13923104 (-) True XLOC_014642
TCONS_00028942 lncRNA upstream 153782 13928251 ~ 13933186 (-) True XLOC_014643
TCONS_00030177 lncRNA upstream 287573 14062042 ~ 14066550 (-) True XLOC_014646
TCONS_00028947 lncRNA upstream 413651 14188120 ~ 14190086 (-) True XLOC_014648
TCONS_00030179 lncRNA upstream 2252424 16026893 ~ 16030742 (-) False XLOC_014657
TCONS_00028930 mRNA downstream 446430 13194146 ~ 13286738 (-) True XLOC_014637
TCONS_00028929 mRNA downstream 446446 13193215 ~ 13286722 (-) False XLOC_014637
TCONS_00028928 mRNA downstream 765182 12957900 ~ 12967986 (-) False XLOC_014635
TCONS_00028927 mRNA downstream 768148 12937066 ~ 12965020 (-) False XLOC_014635
TCONS_00028924 mRNA downstream 1084760 12630414 ~ 12648408 (-) False XLOC_014633
TCONS_00028936 mRNA upstream 28686 13803155 ~ 13808632 (-) False XLOC_014641
TCONS_00028937 mRNA upstream 28951 13803420 ~ 13808630 (-) True XLOC_014641
TCONS_00028938 mRNA upstream 130599 13905068 ~ 13923091 (-) False XLOC_014642
TCONS_00028939 mRNA upstream 130614 13905083 ~ 13923091 (-) False XLOC_014642
TCONS_00028941 mRNA upstream 149131 13923600 ~ 13933204 (-) False XLOC_014643
TCONS_00028926 other downstream 1099905 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028921 other downstream 1340410 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028910 other downstream 1587403 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other downstream 1596297 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028907 other downstream 1601988 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028954 other upstream 1400374 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 2252950 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 2253987 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028964 other upstream 2254839 16029308 ~ 16029443 (-) True XLOC_014660
TCONS_00028972 other upstream 3225158 16999627 ~ 16999742 (-) True XLOC_014664

Expression Profile

//