RNA id: TCONS_00028928


Basic Information

Item Value
RNA id TCONS_00028928
length 519
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_014635
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12937066 ~ 13009415 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTATCGGACACATAACTGTAGGTTAGCATCTAAATGGCGTGATTCTGAAGAAATGTTGCACTACAGTAACACACAAGCTCATCTGTGAGACCAAGCTGCTGTATGTTCAAGGCAGAGGCACGCCGCAGTCGCTGCAGACTCTTCTGGCTCTTCTTTTTCCATTACAGCAAACCTCCTGCAACTTTCAAAACACATCAAATATGAGAATCTTGCAGCCGGACTCgctggtggtgttatttccacaATGGTGCTACATCCATTGGATTTGATCAAAATCAGGTTTGCAGTAAGTGATGGTCTGAAAATGAGGCCCCAATACGATGGCATGTTAGACTGCATGAAGACCATCTGGAAGCTGGAAGGCATTAGAGGTCTCTATCAGGGAGTGACGCCCAACATCTGGGGGGCCGGATCATCATGGGGCCTCTACTTCCTCTTTTATAATGCTATTAAAGCATACACACAGGAGGGACGGCAAACAGAGCTGAGTGCATGTGAACACCTGGTGTCCGCAGCG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015230 FAD transmembrane transporter activity molecular_function
GO:0008517 folic acid transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-758 Predicted to enable FAD transmembrane transporter activity and folic acid transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in anterior neural tube; optic cup; and tail bud. Orthologous to human SLC25A32 (solute carrier family 25 member 32).

Ensembl:

ensembl_id ENSDART00000151064

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030169 lncRNA downstream 333938 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00028922 lncRNA downstream 553584 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00028909 lncRNA downstream 819161 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00030168 lncRNA downstream 1730332 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 2081070 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030172 lncRNA upstream 217967 13185953 ~ 13188728 (-) True XLOC_014636
TCONS_00028931 lncRNA upstream 396550 13364536 ~ 13365511 (-) False XLOC_014638
TCONS_00028932 lncRNA upstream 396550 13364536 ~ 13366234 (-) False XLOC_014638
TCONS_00030173 lncRNA upstream 396799 13364785 ~ 13370153 (-) False XLOC_014638
TCONS_00030174 lncRNA upstream 397142 13365128 ~ 13370153 (-) True XLOC_014638
TCONS_00028924 mRNA downstream 309492 12630414 ~ 12648408 (-) False XLOC_014633
TCONS_00028925 mRNA downstream 309778 12632137 ~ 12648122 (-) True XLOC_014633
TCONS_00028923 mRNA downstream 553310 12398553 ~ 12404590 (-) True XLOC_014631
TCONS_00028920 mRNA downstream 565081 12362787 ~ 12392819 (-) False XLOC_014630
TCONS_00028918 mRNA downstream 635544 12297233 ~ 12322356 (-) False XLOC_014629
TCONS_00028929 mRNA upstream 225229 13193215 ~ 13286722 (-) False XLOC_014637
TCONS_00028930 mRNA upstream 226160 13194146 ~ 13286738 (-) True XLOC_014637
TCONS_00028933 mRNA upstream 671500 13639486 ~ 13733870 (-) False XLOC_014640
TCONS_00028934 mRNA upstream 746583 13714569 ~ 13774502 (-) False XLOC_014640
TCONS_00028936 mRNA upstream 835169 13803155 ~ 13808632 (-) False XLOC_014641
TCONS_00028926 other downstream 324637 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028921 other downstream 565142 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028910 other downstream 812135 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other downstream 821029 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028907 other downstream 826720 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028935 other upstream 765182 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028954 other upstream 2206857 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 3059433 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 3060470 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028964 other upstream 3061322 16029308 ~ 16029443 (-) True XLOC_014660

Expression Profile

//