RNA id: TCONS_00030169


Basic Information

Item Value
RNA id TCONS_00030169
length 983
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id XLOC_014632
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12620926 ~ 12623962 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaaaagAAGTAATCTGGAATTTGAACAGCTTGTTAAAGCCCCTTTGTGAAAACATTAATCATAATAAGTGCCATGACGCAGTTCAGTTGTGGAGACTTTAGGCTGGATCAGAGTTCTTCATCTCCATTTCAGGAAAACGAGATATTCGGAAAATgtaaaaaggaaggaaagaattCCCAGGAACAGGCAAAGACCTGTGGATTGACGGAGAACAAAAGTAACCAAGGATAGCCGTTTTTACCCTCTCTTTAACCAGAATAAGTGCAACGTAAAGACTTGCTGTTGTAGTTGTGAGTCGCACATCCCCAAGATTAAGATTATATCATGGCACTCAATTTGGATTTTGATTGGTTGTGAACAGTTTCTGTGCACAAGTCCTGGAAATGAACAAAAAAACGAATACAAAATTTCTCAATCCTATGACCCATGTGGTCTCTCACGCAAACAATCTGTGCCAACAcacgtgttttgttttaaatacaggAAAGCATACAAAAACCAAACAAAGAGCTTTAGCCGAGGAGCCCAAACATCCATACAAGGCCCCGAAgttctagcaaaaaaaaaaaaaaaacatacaaaaaaataaactttgtaaGCTTGGTTCCTCAATTTCTTCGATTTAAATTGTGCAAGGGGAGTGGTCTAACCGTGAAGCCACTCCCCCTTTAGGTCCAGGAGGAAGTACCAGAGAGCGCAGATGACGACACGCGCTCTCTACTGCCCTCTAGTGCCTCCTAGTCACACGGGTTTGTCGCGCCGACTATCCTTAACCTTGACGAACAGGGTTGTGCTTGCGCCAGGCTGGCCGGAGCGGCTGGCTGTCCTCTGATTGGAGGGTGGTGCGTTATTGCTGTGCTGGTGCAGGAAGGAGGCGGAGCCTGGATAAGTCTGACCCATCACCTCACTATAGGTAGGTGGCGGTCCCTCCACGTGCGAGTTCGAGGCACTCTTGCCAGAGTTGCTGCTCGGGGGCCGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028922 lncRNA downstream 216610 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00028909 lncRNA downstream 482187 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00030168 lncRNA downstream 1393358 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 1744096 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 1756127 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00030170 lncRNA upstream 343057 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00030171 lncRNA upstream 343057 12967019 ~ 13009415 (-) True XLOC_014635
TCONS_00030172 lncRNA upstream 561991 13185953 ~ 13188728 (-) True XLOC_014636
TCONS_00028931 lncRNA upstream 740574 13364536 ~ 13365511 (-) False XLOC_014638
TCONS_00028932 lncRNA upstream 740574 13364536 ~ 13366234 (-) False XLOC_014638
TCONS_00028923 mRNA downstream 216336 12398553 ~ 12404590 (-) True XLOC_014631
TCONS_00028920 mRNA downstream 228107 12362787 ~ 12392819 (-) False XLOC_014630
TCONS_00028917 mRNA downstream 296412 12297100 ~ 12324514 (-) False XLOC_014629
TCONS_00028918 mRNA downstream 298570 12297233 ~ 12322356 (-) False XLOC_014629
TCONS_00028919 mRNA downstream 305233 12297730 ~ 12315693 (-) True XLOC_014629
TCONS_00028924 mRNA upstream 6452 12630414 ~ 12648408 (-) False XLOC_014633
TCONS_00028925 mRNA upstream 8175 12632137 ~ 12648122 (-) True XLOC_014633
TCONS_00028927 mRNA upstream 313104 12937066 ~ 12965020 (-) False XLOC_014635
TCONS_00028928 mRNA upstream 333938 12957900 ~ 12967986 (-) False XLOC_014635
TCONS_00028929 mRNA upstream 569253 13193215 ~ 13286722 (-) False XLOC_014637
TCONS_00028921 other downstream 228168 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028910 other downstream 475161 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other downstream 484055 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028907 other downstream 489746 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028905 other downstream 574356 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028926 other upstream 9187 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028935 other upstream 1109206 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028954 other upstream 2550881 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 3403457 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 3404494 16028456 ~ 16028590 (-) True XLOC_014659

Expression Profile

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