RNA id: TCONS_00030170


Basic Information

Item Value
RNA id TCONS_00030170
length 1305
lncRNA type sense_over
GC content 0.48
exon number 2
gene id XLOC_014635
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12937066 ~ 13009415 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgaaatctgcaggaaggtactCCAGGAACATGTCAACAATGACCAAACCACACCACAGAGTTAAGGGTTGCTGAGCAATCTCCATCAGCAGGCTTACTTCAGTGTGGACtgctccttctcctcctctttcttctGTCTGTCCATGACCGAAAGGATGATCTTCCTCTCCTCCTCAGTGAGGTGGCTCAGGTCTGGCATGTCCGGCGGATCAGGAGCCACAGGGGACGTGGCCGGGGCCGGGGCACCCCGAGCTGACATTTTCAGGTCTATGTGCTGCTGAAAGAGCAATGAATGAACATTAAATGCATCTGCAGAGAGACATGTGCTACTGTTTGTGTTTATCGGACACATAACTGTAGGTTAGCATCTAAATGGCGTGATTCTGAAGAAATGTTGCACTACAGTAACACACAAGCTCATCTGTGAGACCAAGCTGCTGTATGTTCAAGGTAGACATTTAGCACACTATTAACGATAATCGATATAACCCCGTGACAGCATGGGAAAACGAGTGTACACAATGTAGCTTGTCACGCCGGCTCATAAAAACAAGCATCTTCTGAGAATTAGGTGTAAAACCCTTGGGGCTTCTCGCGTTACATGCCTGTTTCCGGGCATCCCTCGCATGCCTGTCGAATGTGTGGAGAGAAAACGAGTGCTTGCCTTTTATTTCGCAATCATGGTGAATGCAGTCTAACCCATGGCTGCTGCCGCTTATGGAGAGCTCTCGCGCATCGTCCAATGGCAGGGCGCGCGGTGCCTTATTGCGGTTCTCGGCGTCCTCGCTTCCGCCACCGTCCTCCTGATTCCCTCCTGGTCGCTGCTGTTAACTCCAAGAGATTTCTTGAATGCACAAAAATGGATGCGGTAGGGGAAACGGTCCGATAGGAGAGCGAGGCGGAGCGACGGTCTTACGTAGGACAAAGATCAGATGGTCCAGTCGCACGGGCGGGGGCAGCGGAAGTGCGCGCGCCCGGACACATTCATTGACAGGAGGCGTGAGAGGAGCTGTGATGTACTGTAGACTATAGAGATGATAAGTCATCATCACTTGTTACAGTTTTATGTCGCAGAAAGCAATTGGTTAAATGATCCACGTGTTCCTGGATGACAATTGCGAAACGCTATTAGACAAACCCAAAAtgaataactttaataattacCATCCAAATGGCAGATGATTATGAATAGGGTGTAAATAAaccatatgtaaatatattttgacTTTCTTCAAAACTGTAATCTGTTCAATCTCAAAAGCTAGgagttctatctatctatctatctatctatctatctatcta

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015230 FAD transmembrane transporter activity molecular_function
GO:0008517 folic acid transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030169 lncRNA downstream 343057 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00028922 lncRNA downstream 562703 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00028909 lncRNA downstream 828280 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00030168 lncRNA downstream 1739451 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 2090189 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030172 lncRNA upstream 177737 13185953 ~ 13188728 (-) True XLOC_014636
TCONS_00028931 lncRNA upstream 356320 13364536 ~ 13365511 (-) False XLOC_014638
TCONS_00028932 lncRNA upstream 356320 13364536 ~ 13366234 (-) False XLOC_014638
TCONS_00030173 lncRNA upstream 356569 13364785 ~ 13370153 (-) False XLOC_014638
TCONS_00030174 lncRNA upstream 356912 13365128 ~ 13370153 (-) True XLOC_014638
TCONS_00028927 mRNA downstream 1999 12937066 ~ 12965020 (-) False XLOC_014635
TCONS_00028924 mRNA downstream 318611 12630414 ~ 12648408 (-) False XLOC_014633
TCONS_00028925 mRNA downstream 318897 12632137 ~ 12648122 (-) True XLOC_014633
TCONS_00028923 mRNA downstream 562429 12398553 ~ 12404590 (-) True XLOC_014631
TCONS_00028920 mRNA downstream 574200 12362787 ~ 12392819 (-) False XLOC_014630
TCONS_00028929 mRNA upstream 184999 13193215 ~ 13286722 (-) False XLOC_014637
TCONS_00028930 mRNA upstream 185930 13194146 ~ 13286738 (-) True XLOC_014637
TCONS_00028933 mRNA upstream 631270 13639486 ~ 13733870 (-) False XLOC_014640
TCONS_00028934 mRNA upstream 706353 13714569 ~ 13774502 (-) False XLOC_014640
TCONS_00028936 mRNA upstream 794939 13803155 ~ 13808632 (-) False XLOC_014641
TCONS_00028926 other downstream 333756 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028921 other downstream 574261 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028910 other downstream 821254 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other downstream 830148 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028907 other downstream 835839 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028935 other upstream 724952 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028954 other upstream 2166627 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 3019203 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 3020240 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028964 other upstream 3021092 16029308 ~ 16029443 (-) True XLOC_014660

Expression Profile

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