RNA id: TCONS_00028866


Basic Information

Item Value
RNA id TCONS_00028866
length 321
lncRNA type read_through
GC content 0.40
exon number 2
gene id XLOC_014603
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10859122 ~ 10881508 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagtgcGTGAGACTTCGCGGGATATCTGTGTTGTGCTTGAAGTGGATaaaagttaattattattttggaaACAGCCACAAAATATATTCCTGGCTTCTCAGCGCTTCTCTCAGATTCACCAGCTTCTGTTGAGCGCGCTCGTGCATCGACGTGAAGTAAGGCTCCAGACGATCCTTCACATCTTCCACGCTCTGTGAAGCACGAGACTGAACCTCCTCAAGGTATGTTGACATTTTTCTATAAATCAAATGAGGGATAAAATATTAGTTTGCatcaaaatatgtttaaatatatagtttGATTATGCTTattaagtagggc

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:1905368 peptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028835 lncRNA downstream 540160 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 952183 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 1175614 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 1249610 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00030167 lncRNA downstream 1249747 9605861 ~ 9609375 (-) True XLOC_014570
TCONS_00028870 lncRNA upstream 15284 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 359312 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1274342 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028922 lncRNA upstream 1538095 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 1760477 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00028864 mRNA downstream 49116 10805858 ~ 10810006 (-) True XLOC_014602
TCONS_00028863 mRNA downstream 87564 10738150 ~ 10771558 (-) True XLOC_014601
TCONS_00028861 mRNA downstream 128634 10692584 ~ 10730488 (-) True XLOC_014599
TCONS_00028856 mRNA downstream 202326 10649424 ~ 10656796 (-) False XLOC_014598
TCONS_00028857 mRNA downstream 202421 10649425 ~ 10656701 (-) False XLOC_014598
TCONS_00028869 mRNA upstream 11152 10871601 ~ 10881508 (-) False XLOC_014603
TCONS_00028871 mRNA upstream 15284 10875733 ~ 10881141 (-) True XLOC_014603
TCONS_00028872 mRNA upstream 32016 10892465 ~ 10915898 (-) True XLOC_014604
TCONS_00028873 mRNA upstream 57153 10917602 ~ 10920577 (-) True XLOC_014605
TCONS_00028874 mRNA upstream 94888 10955337 ~ 10971230 (-) True XLOC_014606
TCONS_00028860 other downstream 128644 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other downstream 153647 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028853 other downstream 212300 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028825 other downstream 617011 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028819 other downstream 735775 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028885 other upstream 332800 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028897 other upstream 865047 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028905 other upstream 1186005 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028907 other upstream 1270596 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028910 other upstream 1274398 12134847 ~ 12145765 (-) True XLOC_014624

Expression Profile

//