RNA id: TCONS_00028872


Basic Information

Item Value
RNA id TCONS_00028872
length 2908
RNA type mRNA
GC content 0.45
exon number 16
gene id XLOC_014604
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10892465 ~ 10915898 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCAACAACGTCACTTCCGCTTGTTTTGGGAGGCTTGATGAACGAAGGAGGACGTTTCCGTGCGGTTCAGCAGCGGGTTATTTACTTCGGAAGAGCCCGCTAAAGTAACAATAGCAACAATTTCGAGCACCTTAAAGATTCCCGCAAGGCACAGATCCGTTCTGGGAACAGTAAACAAAAGTTAAACCACACTGGTTTGGATTTCTGAATAAAAACGGAGTAAATAAGTTAAGGGCTGTGGGGTAAAAACCACAAGTGAAAACAAAGCAGGACCATATGAAACTTCCGCCAGAAAATGGCTGCGCCGGCTGTAGTTTCCACGGATGGAGCAGACTCCAGTACTCCTGGAAATCGAAAGATGGCGTCTTCAGAGggTCTCAGCACCTTGGGTTCatcccaaacaaacaaaaagacctTGGGTCACCGAGGGATTGACCCCACTGGGGAGACCACATATAAAAAGACTACATCATCTGCACTGAAAGGTGCCATTCAGCTGGGAATCACACACAGTGTGGGAAGCTTGAGCCAGAAGCCAGAAAGAGATGTGCTTATGCAGGACTTTGAAGTGGTAGAAAGCATCTTCTTTCCCAGTCAAGGAAGTAGCTCAACGCCGGGTCATCACCACGGTGACTTCAAGTTTAAAACATACGCTCCCATTGCATTCCGATACTTCAGAGAGATGTTCGGGATCCGACCTGATGACTACCTGTACTCTCTTTGTAATGAACCCCTTATCGAGTTGTCTAACCCTGGAGCGAGCGGGTCTCTCTTCTACGTTTCTAGCGATGATGAGTTTATTATTAAGACGGTACAACACAAAGAAGCAGAATTCTTGCAAACACTCCTGCCAGGTTATTTCATGAACCTGAACCAGAATATGCGCACACTGCTTCCCAAGTTCTACGGCCTCTACTGCGTTCAGGCTGATGGGAAGAATATCCGAATTGTGGTGATGAACAACCTGCTGCCACGCGCTGTACCCATGCACCTTAAATTTGACCTGAAAGGCTCCACATACAAGCGACGAGCTTCACCAAAAGAGAGGTCCAAGGGTGTGCCCACATATAAAGACCTAGACTTCATGCAGGACATGCCTGAGGGCATATTGCTGGAGAATGACCACTACACTGCCCTCAGCAGGACCATGCAGAGAGACTGTCGGGTACTACAAAGCTTTAAGATCATGGATTACAGTCTGCTGGTGGGTATCCATATTTTGCACCGGGCAGGTGAAGAGGCATCTACGGCAGTGCCTGATACCCAGAAAAAGGGGCAAGGCCAGAAGCCCCTGTATTGTACTGCCATTGAGTCAATTCAAGGGGAATCAAAGAGCAAGACTTCACCGCAGCCCTACGAAAGcATGGGAGGAATTCCAGCATTCAATTCAAAAGGAGAAAGATTGCTGGTTTTTATTGGCATCATCGATATACTTCAGTCTTATAGGCTTGTAAAGAAGTTGGAGCACTCGTGGAAAGCTCTGCTGCATGATGGGGACACTGTATCTGTGCACCGGCCGAGTTTCTATGCAGATCGTTTCCAGAAATTTATGTGTAGCACCGTCTTCAGAAAATCGCAATTGAAAACTTCTCCCTCAAAGAGAAGCCGCTTAGGACCCGTGTCTGCTGGGAAGAAGTCAAACATTGCAGTATCTGGACAATCACATCAACAATCCCTTCCTGTAGCAGCAGAACTAACCCAGTCGCAGCTGTGGAGCAGTGAGGACCCTCAAGGAGACAGCGGTATGCAAACCGCTCGTCCAGACTTGCTTCCTCAACAGGTTGCTGAAGATGATATCACAAGCAGCTCGGCTGATACTACCCTGTCAGCAACCTCTCTTGTTAACTCTCGACTCTCCACAAACACTCCAGTTCTCAGCCGCAGCAGTGTAGCTGGTCATTCATCAGAGGAAAGTTTGGACATGGACGTCATTTCACTCAGCGAGATTGTTCCTCAGACAAGCACGTCAGAATGAAAGACTGTGGACGAACAGGTCGAAACAAAGCCCTCAAGGACAAAGTTTTCTCTCTTTTAAAGACATCAGAACAAGAAGAAAGTGGAAAAACAAGATGGAGTTGTGCAAGCACGAGGGGAAGTGAAACTGAAAGAGTCTGGAATACAAAAGAGAGAAGTGCACATGTTCATAAAACTGTAAAGATATTCCTCccctttttaataatttttatttttggatgtcaACACAACGGCATCCAATATTGCTGCTAAGAAATGGACCCAAAAGAAAGACGTACCTCAACAGTGTGATCACTGATGTCAAACAGGGACATACAACAGCAGTGCCATATATACAAGAGCCTCCAGAACAGACATAAAGTCGTGAACTGCATCATGTGAGGCTCTTGGAGAAGAGTACCTTGTGAGTTTTATTTGACCATACTTTTATTAGTCTGCTGCAGTCGTGTTCTTTAATTCCCCAGAGATAAAGAGAAATATTTTTTCGtatattttaaaaggttttatgTAGTATAGCGTGGTTATCGAGGGGGGGGAAGTAGGATGGTTTAATCCAGATCAGGTTGCCTGAACAATCACGTATCAAGacactttttcaaaacttttaatcCGTAAAATGGTTTAGATTTGGTTTTAAAAATGAAGTTAAATGCAGTACTGAGGTGTTGTGTTGGATTTTGAAATGTGCCTTAACTACAGGAGTTATTTTGCCTTACTGCATCTTTTTATTGGGCACGTTGCCTGCTAGTGGATTATGCAGGTTTCTAGGTTTTCCTAaatcacagctctgcacagtttagctttaaccctaattaaacacacctgaccagactaattgagtccttcaggcttgtttgaaacctacaggcatGTTGCTGCATCTTAATTCGCATACTTGtactacaccctaaaagtatgtacttttttgtgaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0001727 lipid kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0052813 phosphatidylinositol bisphosphate kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function
GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-517 Enables ATP binding activity and kinase activity. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Is expressed in head and pronephric duct. Orthologous to human PIP5K1A (phosphatidylinositol-4-phosphate 5-kinase type 1 alpha).

Ensembl:

ensembl_id ENSDART00000163179

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028870 lncRNA downstream 15635 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 27666 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 32016 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028835 lncRNA downstream 573503 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 985526 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00030168 lncRNA upstream 303863 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1218893 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028922 lncRNA upstream 1482646 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 1705028 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 2051121 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00028869 mRNA downstream 10957 10871601 ~ 10881508 (-) False XLOC_014603
TCONS_00028868 mRNA downstream 10979 10859219 ~ 10881486 (-) False XLOC_014603
TCONS_00028871 mRNA downstream 11324 10875733 ~ 10881141 (-) True XLOC_014603
TCONS_00028864 mRNA downstream 82459 10805858 ~ 10810006 (-) True XLOC_014602
TCONS_00028863 mRNA downstream 120907 10738150 ~ 10771558 (-) True XLOC_014601
TCONS_00028873 mRNA upstream 1704 10917602 ~ 10920577 (-) True XLOC_014605
TCONS_00028874 mRNA upstream 39439 10955337 ~ 10971230 (-) True XLOC_014606
TCONS_00028875 mRNA upstream 69471 10985369 ~ 11014641 (-) False XLOC_014607
TCONS_00028876 mRNA upstream 69471 10985369 ~ 11031394 (-) False XLOC_014607
TCONS_00028877 mRNA upstream 71720 10987618 ~ 11031145 (-) False XLOC_014607
TCONS_00028867 other downstream 31999 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028860 other downstream 161987 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other downstream 186990 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028853 other downstream 245643 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028825 other downstream 650354 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028885 other upstream 277351 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028897 other upstream 809598 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028905 other upstream 1130556 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028907 other upstream 1215147 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028910 other upstream 1218949 12134847 ~ 12145765 (-) True XLOC_014624

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000321_03361065_03369574.mRNA True 1526 mRNA 0.49 11 CI01000321 3361065 ~ 3369574 (+)