XLOC_014605 (ecm1a)


Basic Information

Item Value
gene id XLOC_014605
gene name ecm1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10917602 ~ 10920577 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028873
AACCTCCCATCAAACCTGAAGACAGCGGAAAGAAGATATTTTCTCTTTCAAGTAACCCATCATGGTTTGGAAAAGCACACTTTTAAGTGCTGTAATTCTTCATCTGTTTTCATCAGGAGCCGGACAGAACATGGACCCTGATGTACTGATGGATTCAATCTTTCCTCCAGCCAGACCTTCACTTTACAATCTCAACTCGCTCTGTCTTCACGGCAATGGCCGCTTCAGATATACTGCTGAAAGTTTCCCTCCGTCCAGCTTTGCTCATGCTCGTCGTGCTGGAAAGACGATGAACAGGCTCGAAGCTTGGTTCGGTCAGTGCTGCTATGGAGGTTTGGCTCACAAAAATGGACAGATCCTTTGCTGCGCTAAACAAGCATGGGAAACCGCCTTATCTTATTTCTGCCTTGAGGAGTTCTCCACCAAGACCCTGGTCCATGACTGCTGTGAGAAGAAAGGAGGGGAAAGGTGGGGCTGCTTTGAAAGAGAGGCTCCTAACCCATATTACCAACCCTTACCTGGTTATATTGCCCCTCAAATATCATCTGACAGGATTTTTACCTGGGACCCCAAAGCCTGTTAAAGTCTGACTGATAACCTTAGCATTAGTTTACTATCACTAGAGTTCGAATCATCAAATGTGAAAAATATGACCCTGCATATCAGTATGTTTGTCTTCACATGCATGCCATAGAATggtattcaaaataaaatgtcatttgatCATAT

Function

symbol description
ecm1a Predicted to be involved in regulation of bone mineralization. Predicted to act upstream of or within signal transduction. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in lipoid proteinosis. Orthologous to human ECM1 (extracellular matrix protein 1).

GO:

id name namespace
GO:0030500 regulation of bone mineralization biological_process
GO:0007165 signal transduction biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121204-1 Predicted to be involved in regulation of bone mineralization. Predicted to act upstream of or within signal transduction. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in lipoid proteinosis. Orthologous to human ECM1 (extracellular matrix protein 1).

Ensembl:

ensembl_id ENSDARG00000100535

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028873 True 729 mRNA 0.44 3 10917602 10920577

Neighbor

gene id symbol gene type direction distance location
XLOC_014604 pip5k1aa coding downstream 1704 10892465 ~ 10915898 (-)
XLOC_014603 NA coding downstream 36094 10859122 ~ 10881508 (-)
XLOC_014602 si:dkey-3n22.9 coding downstream 107596 10805858 ~ 10810006 (-)
XLOC_014601 slc9a3.2 coding downstream 146044 10738150 ~ 10771558 (-)
XLOC_014599 slc9a3.1 coding downstream 187114 10692166 ~ 10730488 (-)
XLOC_014606 LO018584.1 coding upstream 34760 10955337 ~ 10971230 (-)
XLOC_014607 tpm3 coding upstream 64792 10985369 ~ 11031394 (-)
XLOC_014608 arhgef1a coding upstream 118940 11039517 ~ 11106315 (-)
XLOC_014609 si:dkey-240h12.3 coding upstream 208741 11129318 ~ 11157659 (-)
XLOC_014610 si:dkey-240h12.4 coding upstream 246712 11167289 ~ 11208824 (-)
XLOC_014711 CR382300.3 misc upstream 8808113 19728690 ~ 19728755 (-)
XLOC_014600 BX005424.1 non-coding downstream 212127 10705459 ~ 10705475 (-)
XLOC_014581 BX950852.2 non-coding downstream 794255 10123233 ~ 10123347 (-)
XLOC_014580 BX950852.1 non-coding downstream 904988 10012498 ~ 10012614 (-)
XLOC_014578 NA non-coding downstream 1010663 9904324 ~ 9906939 (-)
XLOC_014611 FP074861.1 non-coding upstream 272672 11193249 ~ 11193363 (-)
XLOC_014612 NA non-coding upstream 299184 11219761 ~ 11227568 (-)
XLOC_014620 CR548625.1 non-coding upstream 804919 11725496 ~ 11725631 (-)
XLOC_014623 FP236813.1 non-coding upstream 1125877 12046454 ~ 12046570 (-)
XLOC_014625 CU468682.1 non-coding upstream 1210468 12131045 ~ 12131180 (-)

Expression


Co-expression Network