RNA id: TCONS_00028873


Basic Information

Item Value
RNA id TCONS_00028873
length 729
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_014605
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10917602 ~ 10920577 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCTCCCATCAAACCTGAAGACAGCGGAAAGAAGATATTTTCTCTTTCAAGTAACCCATCATGGTTTGGAAAAGCACACTTTTAAGTGCTGTAATTCTTCATCTGTTTTCATCAGGAGCCGGACAGAACATGGACCCTGATGTACTGATGGATTCAATCTTTCCTCCAGCCAGACCTTCACTTTACAATCTCAACTCGCTCTGTCTTCACGGCAATGGCCGCTTCAGATATACTGCTGAAAGTTTCCCTCCGTCCAGCTTTGCTCATGCTCGTCGTGCTGGAAAGACGATGAACAGGCTCGAAGCTTGGTTCGGTCAGTGCTGCTATGGAGGTTTGGCTCACAAAAATGGACAGATCCTTTGCTGCGCTAAACAAGCATGGGAAACCGCCTTATCTTATTTCTGCCTTGAGGAGTTCTCCACCAAGACCCTGGTCCATGACTGCTGTGAGAAGAAAGGAGGGGAAAGGTGGGGCTGCTTTGAAAGAGAGGCTCCTAACCCATATTACCAACCCTTACCTGGTTATATTGCCCCTCAAATATCATCTGACAGGATTTTTACCTGGGACCCCAAAGCCTGTTAAAGTCTGACTGATAACCTTAGCATTAGTTTACTATCACTAGAGTTCGAATCATCAAATGTGAAAAATATGACCCTGCATATCAGTATGTTTGTCTTCACATGCATGCCATAGAATggtattcaaaataaaatgtcatttgatCATAT

Function

GO:

id name namespace
GO:0030500 regulation of bone mineralization biological_process
GO:0007165 signal transduction biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121204-1 Predicted to be involved in regulation of bone mineralization. Predicted to act upstream of or within signal transduction. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in lipoid proteinosis. Orthologous to human ECM1 (extracellular matrix protein 1).

Ensembl:

ensembl_id ENSDART00000165630

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028870 lncRNA downstream 40772 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 52803 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 57153 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028835 lncRNA downstream 598640 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 1010663 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00030168 lncRNA upstream 299184 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1214214 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028922 lncRNA upstream 1477967 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 1700349 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 2046442 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00028872 mRNA downstream 1704 10892465 ~ 10915898 (-) True XLOC_014604
TCONS_00028869 mRNA downstream 36094 10871601 ~ 10881508 (-) False XLOC_014603
TCONS_00028868 mRNA downstream 36116 10859219 ~ 10881486 (-) False XLOC_014603
TCONS_00028871 mRNA downstream 36461 10875733 ~ 10881141 (-) True XLOC_014603
TCONS_00028864 mRNA downstream 107596 10805858 ~ 10810006 (-) True XLOC_014602
TCONS_00028874 mRNA upstream 34760 10955337 ~ 10971230 (-) True XLOC_014606
TCONS_00028875 mRNA upstream 64792 10985369 ~ 11014641 (-) False XLOC_014607
TCONS_00028876 mRNA upstream 64792 10985369 ~ 11031394 (-) False XLOC_014607
TCONS_00028877 mRNA upstream 67041 10987618 ~ 11031145 (-) False XLOC_014607
TCONS_00028878 mRNA upstream 67961 10988538 ~ 11015238 (-) False XLOC_014607
TCONS_00028867 other downstream 57136 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028860 other downstream 187124 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other downstream 212127 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028853 other downstream 270780 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028825 other downstream 675491 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028885 other upstream 272672 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028897 other upstream 804919 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028905 other upstream 1125877 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028907 other upstream 1210468 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028910 other upstream 1214270 12134847 ~ 12145765 (-) True XLOC_014624

Expression Profile

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