RNA id: TCONS_00028876


Basic Information

Item Value
RNA id TCONS_00028876
length 5591
RNA type mRNA
GC content 0.40
exon number 9
gene id XLOC_014607
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10985369 ~ 11031394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCATATTTGACTTTTATAAGTATACATATATCAGTTAAAATGAATTACATTCTTGATTTTACTACAAAAACATTACAACTTCACCTTCCAAAAATAGGCCCTCCCAAATTTCAATACAGGATTGCAGCTTTGCCACAACGTCACCACACCAAACAGGACTTGTGACTGTATTAGGTGAGATATAATAGGAAAGTGGGTGTGGTATATTCGATAATAGGCGGGGGGTGATGCCCCCAGATATAAATGACCTCTTACTATCCCTTACTGGGTCTGGTCTCTCTCCACTTTACTCCCTCTCCCTGCACATTCCCCTCTTGACCAGCTCCTGTTCCTAGACCACGAGTCTACTCACCTACTGCACTGACACTTTCTGCTTCTCGGACCGTGAGCCCTTCTCACCAACGCCAAGATGGAGGCCGtcaagaagaagatgatgatgctGAAGCTGGATAAGGAGAATGCTCTGGACCAGGCTGAGCAGGCAGAGACTGACAGGAAAGCAGCAGAGGAGAGAAGCAAACAGCATGAGGATGAGCTGATTCAGATGCAGAAGAAGCTGAAGGGAACTGAAGATGAGTTGGATAAATACTCAGAGGCCCTGAAGGACGCCCAGGAGAAACTGGAGATATCTGAGAAGAAGGCTGCGGATGCTGAGGCAGAGGTGGCTTCTCTGAACAGGCGTATCCAGCTGGTTGAGGAGGAGTTGGATCGTGCTCAGGAGAGACTGGCCACAGCCCTGCAAAAGCTGGAGGAAGCCGAGAAGGCCGCAGATGAGAGCGAGAGAGGGATGAAGGTGATTGAGAACAGGGCTCTGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGCTTAAGGAGGCCAAGCACATTGCTGAGGAGGCTGACCGCAAATATGAAGAGGTGGCTCGTAAGCTGGTGATCGTTGAGGGAGAGTTGGAGCGTACAGAGGAGAGAGCAGAGCTTGCAGAGAGCCATGTCAAGCAGATGGAGGAGGAGCTGAGAGCTCTTGACCAGACACTGAAGACTCTTCAGGCCTCAGAGGAGAAGTATTCCCAGAAGGAGGACAAGTATGAGGAAGAAATCAAGATCCTCACTGATAAGCTGAAGGAGGCTGAGACCCGTGCAGAGTTTGCTGAGAGGTCTGTGGCCAAACTGGAGAAAACCATTGATGATTTGGAAGAGAAACTGAGAGATGCTAAAGAGGAGAACATCAAGATCCATGCTACTTTGGACCAGACCCTGAGCGAGCTCAATAGTTTCTAAAGAAGACCTGGAGCAGAAAAAAGGCCTTTTCTTCCCTTCTTGACTCCCTCATCTCATTTTGGTTTCTTTGTCTCTGCACATCTGATTCTcccccttttttttcttctcttcttcTGCTGGAGGATAAGCTCACCAAGCCAACCAGCAAAAATGTGGTGCCTCTCAATTTTTCCAAACTACTATTCCAAGTGATTTGAGAAATGATCTACTACGATACTCCTCAAGAGTCAAATGTTGACCTCGGGGAGCCTTTTTTGGTATTGCTCCATGATCAGAGCTTTACGAGCTAGTGTTTTTTCTGCATATCAGCCCAAACTCTCAATGATAATTTTACTGGAGGCTgatttttgtaaaattttgtgCCATAAAAGCCTTGTTGGCTTGTCTCTTGCTTGGCTTTAGATCATTCTCAAGCCATTTTTTTCCTGCTGTTGCTCTGACACAGGTTGTTTTTGCTGGTCTTGTTGGTGCCTGATCCACTGCTATCCTTTTcacacctcttttttttttttcttcatcctgCACAAGTTTCTGCTGCCTGTTAGTCGGCATCACCGGTTTTGGGACCAAAACCACATCATGTGGTCTGTAACAGTATGCACAACCATGCCGTGAGGaccaaatttgttttattattgttattattattaaaagcctTTGCTTCCATTCGGAGTTTGTTTTTTTGAGTAATATATGTATTCATTGTTTGGGTCGAATCCCCTTGCTTTTTTAACACAAATGTTTTGCAAACCACTATTTGAAATGGTGCACTGTTATGGGCTTATGGTGAGCAGATGAGGCCAAGTCATGGTTTCTTCattataattttcttttcatttgctttAAAGAGCCATATTCTACCCAGGGAAGAAAGGTtgaagttgttttgtttttttaccgtGAGTTCAAAGCAGTGGCACTGCCAGATTTAAAAGGTTCAAAAGCCGTGCAGATCTAAAATATGTATTATGAACACAGTAATGGGAGCGAATTGTAACACTTAATAGTATACAAATTTAAGAAACAGGGGTGAACACATAGTTTTAACTGGAAAAAGCCCACAATGATGTGTAATCACTTTGTTACTGTCTGTATCTTGTGTAATGATAcctaaattctttttttaaataaaaaccatGATTTTTACTGTCACTGAACCACTGTGTTTTTATGGATTTGATTTTTcatcagattttcattttttttttcttatttttgtttatttctagaAACAAAAACGGACGTTTTTCTTGAACAGTCACTGATATTTATTTGGAAGGATATCCGTTTCAAGATGGACATCAGTACTGTTTTGTTTGTGATAGAAGTCTAATTTCAACCtttaattttaatacatacagtgatttaaactttaaataattttgaGAATGTTACAATATTGTTAAATAACATGAATGTTATGTACATTGATTCTGtagatttatttcaaatattccAAAGAGGTGtcaataaaaaagcaaaacaattacCCAAAGATAAATATTTACTCCTCCATTGCTTCTAAACTAATGAATTttttacttctgttgaacacaaaacaagatattctgaagcatgttgtaaaaaagcagccattgaaaTCTATGGTGGGAACAAAATTACCATGGTAGTTATTGGCTAATTTTATCTTGtcgttctttaaaatatctatatgTGTTCAGCAAAACGATGAAACTGGTTTTAAACAGGTGGAGTAAATGATagcaaaataaaattttttgggtgaacttttcctttaacaCAATGAAGCTGCACAATTAGAGCATTAGATCAGCATTATATTTTCTAATAACATCATGTGACCCTGAAAACCAGTGTTGGGGGGGAATTCATTGTATGTAATGGAAGTTAAGTAATCGGATTACTTTTTCCAAGTAACTAGCAATGCATCAGATTACTTTTTAATTTCTCTGAAAATATAGAAGTAGAGTAAATTccagttattttgttttattatttattgactgACACTGACGGCATGTTGATCTTGCAGTAGATCTGTTttaagccctggtcagatcacacgattttaTTGTCACCTATGTCAGATTATGCGACTTTGTCTTGATAATCTTGTCGTGGGcaacaaatgtgccagactacacgttcCTTCACGATCAGTCATCCCATGATGTCTATGACGAGTGTTATTTCCCAAAGCATTCACAAGTGTTGTTATAACAATATatctcattattattgttgttttttgttatgtcAGTCTCAATAAACATTGATGCTTGCTGACaaataggctacattatttaagggcattcgttatgacattttaagaaagcacatgcaactacaaaaaaacgccagcaaataaagaaaccgtcttcatcaatttgacgtgttgcaaattggtcacaacacaaacaactgaagaaacgtgcTGCAAATTGGTCGCAACACTGGCAAGTATACACTaatacaatggaaatgtttctaatgtgttaaataaaattgcttaaaacacctAAATGTTTTAGAAAAGGTAGTTTAAGTTTGCATAACCatgattgatcttatccacccGAGACCCAGCTATAAGTAAAAAGCAGcctttttgattacctgacccaCAGATTAATGTCAGCGCCCGCTGAGATAACTCAGAAATTCAACCACGTGACAGAACTTGTCGTAAAGAAAAAATTTAACATGCTAGATTTTCATTGTATtggttgtcgtgaactatgccacattacacaagAAGAAATGATTGGACCTATGATTTGCGACGCCCATTTGTCGTTTAAGACTCCACACGACACCTTACTTCAAGGAAATCAAGACAAAATCGTGTGATTTTTACCGGGGCTTTAAAAGCACAAAAAACAATTTGGTATTCCTTTAGATTAATAAAAGCttaaatgtttatatatctcATTCTTAATACAATCTAGAAATGTAGCACAGCTGAAAGGTTTATGAGGCTTAAAAATGCTTACGTCTTCCAAAAACAgacattattttcttttaaaataataaaaactaacagCAAGCTCAGTCAAGATGGAAAAAGTAACACAAATGTACGTAATGTAACATTTCTTTTAGAAGTATTTTCCCCCAACACTGCTGAATAGTAGAAACATGCTGTCATCACaacaatacattttaatcaaTACGTGAAATTGAATAAATTTGACTGTTTTCACCACTGATCTACATAGAAAACTATTCTCATTATCATtctataaacatcagtggttgTTATTATTACTGATATTTTAACCAATATGTACGTTTATTGTCAAACATGGtgcagttatacagtatatttaaactACTAGTGTTTTCCGTGAGTGAATATACTACGGCGTTCTAGAACAGCGGGTCGTTCTCGTATTTCCACAGCCGCCCTTCTCCTGCTCGAAAGCGGTTTTTCCCTCCGAACAGACAAGGAAGTTTATGGTTGGCCTTCATCACCACAGCAACCGTGCAGGAATCTGGTTTTCTAACAGCTTCACACCAGGGAGGGTAATCGACTGGCTGCTTTCCACTAGAGGACAGTAAAGACCAATGAGCTTCAATATCAGCAGCCTGTTGAGGCCTCTAGTATGACACTTACTGTTCACAGCAGCCCACTCCAAACGGCTCgaaacacacacactggaaacATTCATCATTCATCCAGGCCTCCCCGATGTCGAAGACACGGCCGTTGTGTTCACAGCTGGCTGTGGGGAAATGGTGAGCATTACAACTTTGGAAGACATCATTTGACCTACTTTCACACTAGCTGTTTGGTATTAAAGTACACACGAAATCAACCTAGCCATCTTGACTtggttagctcacattgctagttttgtggtgaacagttcatctgtacatgtcatttgaaaaaaaaaaatgtttgcccaTCTTTACTTTGAAATCTGACAATGCACTTCCCTTCTGACTGAGGTATCAGGTGGGCGtggttaacatacttaaccaAGCACAtttcccgatctttctgaatgaactAATGCCcgctttactacatccaatcagctcgcagtagaaaaaaaacaagccacgcccactgttttctcatgtaagggtgttttcacacctgccttatttagttcagttgaagcgcactagagcaggggtggccaaccctgttcctggagagccacgttcctgcagatttcagttgcaacccatatcaaacacacctgcctgtaattatcacgtgatgttcaggtcctaattaattggttcaggtgtgtttgatatgggtagcaactaaaatctgcaggaacgtggctctccaggaacagggttggccacccctgcactagagtttgt

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0007015 actin filament organization biological_process
GO:0005884 actin filament cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05200 Pathways in cancer
ko05216 Thyroid cancer
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-030826-16 Predicted to enable actin filament binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in actin filament. Is expressed in several structures, including adaxial cell; alar plate midbrain region; axis; brain; and musculature system. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 1. Orthologous to human TPM3 (tropomyosin 3).

Ensembl:

ensembl_id ENSDART00000188025

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028870 lncRNA downstream 108539 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 120570 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 124920 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028835 lncRNA downstream 666407 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 1078430 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00030168 lncRNA upstream 188367 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1103397 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028922 lncRNA upstream 1367150 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 1589532 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 1935625 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00028874 mRNA downstream 14139 10955337 ~ 10971230 (-) True XLOC_014606
TCONS_00028873 mRNA downstream 64792 10917602 ~ 10920577 (-) True XLOC_014605
TCONS_00028872 mRNA downstream 69471 10892465 ~ 10915898 (-) True XLOC_014604
TCONS_00028869 mRNA downstream 103861 10871601 ~ 10881508 (-) False XLOC_014603
TCONS_00028881 mRNA upstream 8123 11039517 ~ 11106315 (-) True XLOC_014608
TCONS_00028882 mRNA upstream 97924 11129318 ~ 11157659 (-) True XLOC_014609
TCONS_00028883 mRNA upstream 135895 11167289 ~ 11208782 (-) False XLOC_014610
TCONS_00028884 mRNA upstream 136458 11167852 ~ 11208824 (-) True XLOC_014610
TCONS_00028886 mRNA upstream 199689 11231083 ~ 11238721 (-) False XLOC_014613
TCONS_00028867 other downstream 124903 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028860 other downstream 254891 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other downstream 279894 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028853 other downstream 338547 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028825 other downstream 743258 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028885 other upstream 161855 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028897 other upstream 694102 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028905 other upstream 1015060 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028907 other upstream 1099651 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028910 other upstream 1103453 12134847 ~ 12145765 (-) True XLOC_014624

Expression Profile

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