RNA id: TCONS_00029757


Basic Information

Item Value
RNA id TCONS_00029757
length 264
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_014578
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 9904324 ~ 9906939 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTACAGCATCACGGGAAACGCTTGCCTGCGGTGAGATTATCCCACTGGGACGCAAAGAGGTGCAGGGCAGGAGCTCGCTAATCACTGTGGAAATGAAGATACTCGAGGCACCATTTGGCGACAGAATACACTGGAGAACTTCTAGACAGGCTTTTGAAGTGTGAAAAGATGGATGTTGGAAAGGGTTTGCATATGTAGGAGATGAAGGAAAACCAATGAATGTGAAGAGCCTGGAGGATATTCTTATTGGAGAACAGTGGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028805 lncRNA downstream 220816 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 294812 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00030167 lncRNA downstream 294949 9605861 ~ 9609375 (-) True XLOC_014570
TCONS_00030165 lncRNA downstream 443995 9457546 ~ 9460329 (-) True XLOC_014566
TCONS_00029756 lncRNA downstream 505858 9391235 ~ 9398466 (-) True XLOC_014565
TCONS_00028835 lncRNA upstream 406988 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00028866 lncRNA upstream 952183 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 952255 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 968794 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 1312822 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028814 mRNA downstream 21503 9840771 ~ 9882821 (-) False XLOC_014577
TCONS_00028815 mRNA downstream 37323 9842021 ~ 9867001 (-) True XLOC_014577
TCONS_00028812 mRNA downstream 74359 9813287 ~ 9829965 (-) False XLOC_014576
TCONS_00028813 mRNA downstream 74359 9817120 ~ 9829965 (-) True XLOC_014576
TCONS_00028810 mRNA downstream 117410 9732350 ~ 9786914 (-) True XLOC_014574
TCONS_00028816 mRNA upstream 3023 9909962 ~ 10043142 (-) False XLOC_014579
TCONS_00028817 mRNA upstream 7206 9914145 ~ 10081047 (-) True XLOC_014579
TCONS_00028820 mRNA upstream 270176 10177115 ~ 10196370 (-) True XLOC_014582
TCONS_00028821 mRNA upstream 294231 10201170 ~ 10207103 (-) False XLOC_014583
TCONS_00028822 mRNA upstream 294231 10201170 ~ 10214264 (-) False XLOC_014583
TCONS_00028791 other downstream 1051669 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2078791 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028762 other downstream 2436008 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028751 other downstream 2626731 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028719 other downstream 3665335 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028818 other upstream 105559 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028819 other upstream 216294 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028825 other upstream 331514 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028853 other upstream 729430 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 785227 10692166 ~ 10730478 (-) False XLOC_014599

Expression Profile

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