RNA id: TCONS_00028816


Basic Information

Item Value
RNA id TCONS_00028816
length 10596
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_014579
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 9909962 ~ 10081047 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGTTGAAGGGCCTAATGCGTGAATCAGTGCAGAGGGAGTAATGATTTCCCATGTTCCCTGGGgaatggttgggttcagggagGTCTGGTTCCTGCATAAAGCACTACCCACCCAAGTGACTCTTTGCCTGTGTCATGGCGGCGAGGCCTGCCCTTTCGTTCCTATTGGCTGTGCTGGCATGCACTGGGCCGGCCCAGCCCTCCCCCCCACTGCTGCTCCGCCcccgggagagagagagggactcGGGAGGGGCTTCGGGCGGAGTCAACATCGCTGTGGTTCACTCCGGCTCCTCCCACCTCCCGGAAACGAGCGCCGGGGTGGGGGGCGTGGGCGGCGCCTCTTCGGCGGGCTCCGGTTCCGGTGCCGGGCCAAGCAGCAGCAGCGGCAGCTCGGGGACGGCCTTTCTGAGTCGGGCCTGGTCAGGGCAGGTAGGCGAGAGTGTGATGACACCGTGGGGCCCCGCCAATGTGATCTGGCTGGCTGTCAATGAGAGCAGTCCTGGGAGCCTCTTGCTACAATTGTGCGAGTTGCTAGCTACCACTCCACTACAAGGCCTTGTGTTTGAGGAAGAAAAGCCACCACCGCCTAACCGGGCACCGTTAGCACCTATGCTGGAATTTGTCTCTGCCCAGACAGGAGTGCCTGTGATTGCTGTGGGAGGAGGGGCTGGCCTGGGAAGGGAGCCGCAGGAAAGCGGCTCCGTCTACCTGCAGTTTTCATGCTCCACTGACCTGCAGCTGGAAGTCATTTTTGAGGTTCTGGAGGAGTTTGATTGGACTGCGTTTTCAGTGGTCACCACACGCCACCACGGCTATGAGGATTTCCTGGCCATGGTAGAGGGCATGATAGATGGATCGTTCATCGGCTGGGAGAGAAAGAGCGTGGTGATGCTCAACCTGACCGATGACCCGGGAGGAGCTCGAACCCGCAGGCTGCTGAAGGAGAATGAAGCACAGGTGCGACTCCTCTATTGCTCACAGGAAGAGGCTGAGCAAATTTTTAAGGCTGCATGGGCATCTGGACAGGCCACTCCTTCACATATGTGGTTTGCAGTGGGCCCTGGTCTGTCAGGACTTGGTCTTGAAGGTTTACCCAAGGCTCTGTTCGCTGTGCGACCCCAAGGATGGAGGGACGAGCCACGACGGCGGATCGCAAAAGGTGTATCAGTACTGACGCACGGTGCTATGGCGTTACGCCGCGAGTACGGTGGGGCTCGTGGGACGAGTTTCGCAGGGAATTGTATGATGGATGGAAATCAAACTCAGAGGGTGCCGGGCAGAATCAGGTTCTTCAGCAACATAACTCTATCCGGACGggactattcctttaataatgaCGGTTATCTGGCCAATCCGCTCCTGGATGTGATCTCCTACACCGCGGGAAGAGGCTGGGAGGAGGTAGGTTGGTGGGAGAACGGAGTGCTGCGCTTGCGTTACCCGCCCTGGTCTCGATACGGGCCGTTTCTCAAACCCCTGGATGATTCACAGCACTTGCGTGTGGTTACTCTGGAGGAGAGGCCGTTTGTCATCGTGGAACCCGCTGATCCCGGAACAGGCTCCTGCATCAGAGACTCAGTGCCGTGCCGACTGCCGCTCAACAACAGCATGGTTGTTGAGGGCATTCAATCCATGAAGCACTGCTGCAAAGGCTTCTGTATTGATGTTCTCAAGCGCCTGGCTAAAATAGTGGGCTTCACCTATGACCTCTATCTGGTGACCAATGGCAGGCATGGAAAGAACATAGATGGACAGTGGAATGGAATGGTCGGGGAGGTGGTGTCGAAGCGGGCCGACATGGCGATCGGCTCTCTGACTATTAATGAAGAGAGGTCAGAGGTTGTGGAGTTCTCTGTCCCGTTTGTGGAGACGGGCATCAGTGTCATGGTTTCTCGCAGCAACGGCACTGTGTCGCCATCTGCTTTCCTCGAGCCGTACAGTCCAGCTGTGTGGGTGATGATGTTCGTCATGTGCTTGTCTGTGGTGGCTGTAACCGTCTTCATATTCGAGTTCTTCAGCCCTGTCGGATATAACCGAAGCCTACAGAGCGGCAAGACGGCTGGAGGTTCAAAGTTCACTATAGGGAAGTCTATTTGGCTGCTGTGGGCTCTGGTGTTTAATAACTCCGTTCCGGTGGAGAACCCGAGAGGCACCACCAGTAAGATAATGGTGCTGGTCTGGGCTTTCTTTGCTGTCATCTTTCTGGCCAGCTACACTGCTAACCTGGCAGCTTTCATGATCCAGGAGGAGTACATCGACACTGTGTCAGGACTCAGCGATAAGAAGTTTCAGCATCCCACTGAACAGTATCCTCCCTTGCGCTTCGGCACCGTCCCAAATGGCAGTACAGAGGAGAATATACGCAGTAATTACCCCAACATGCATCAGTACATGGTGCGAAACAACCAGAGAGGAGTGGAGGACGCCATCGAAAACCTTAAAACCGGCAAACTGGATGCATTCATATATGATGCAGCTGTCCTGAACTACATGGCTCGTAAAGATGAGGGCTGTAAAGTAATGACCATCGGCTCTGGAAAAGTGTTTGCTACTACAGGATATGGAGTTGCCTTACACAAGAACTCACGCTGGAAGCGTCCACTCGACCTTGCGCTCCTGCAGCTAGTCGGAGATGATGAGATCGACATGCTTGAACGACTCTGGCTGTCCGGGATCTGCCATAATGATAAGATCGAGGTGATGAGTTCCAAGTTGGACATAGACAACATGGCAGGAGTTTTCTACATGCTTCTGGTTGCCATGGGCTTGAGTCTGCTGGTGTTTGCATGGGAGCATCTTGTCTATTGGAAGCTCCGCCACTGTTTAGGCCGGACAAGAGGACTTGACTTCTTACTGGCTTTTAGTCGGGGAATGTACAGCTGCTGCAATTTCGAGGATGAAACAGCTCCTGGAGGTTCCCAAAGCACACTTCCTCAATACCATCACGTCTCCAcagttcctcctcctcctccccctcATGTGATCTCAACGGCTGTGGCCAATCCCCCTATTGCTATGGCACAACAACTGCCGCAGCAGCAACAAAAGCAACACCACCAGCAGCCACCAGTCTACAGTGCTCTTCTTCCTGGCTCCCCTCCATCAGGTGGACATTCTGCAATGGCTTTAGGGCCATCGAACAGTCCCATTCTCGGAGCACCCATGCCTTGCTCTACATTCCTACCACGTCATGATCGTCGATTGGCTGTGGTGGATCGGTGGACGCGTCCAAAGGTGGGCTCTGAGAAGCCCAGTGGTGTGAGTGGTGGGATTACAGACTTAACCCCGTTCCAAGGCATGCCCCCTCATTGGGGTGCAGGAATAACTGGAGGGGAGGGAGGTCTGGATGAGTACAAGAGATACTATGGCCCAATCGATCCAGAGGGCTTAGGAGTCTCTGTAGAGCCTCAAAATTTGGGCACTCAAACGCCAAAAACTAAGCATCGTGGCACAAAATCCTCTGGAAACCCGCGATTACCTCCTAAAGGCCAAACATCTGGACATACAATTAACCCTGCATTACAACATCCCTCTCCACCTCAGCAATCCGTCTGGAGAAGAAGCAGTCTATCAAAAAGGAAGGGCTCAGGGGGACCACTATATGAAAACATCCTTCCACTTGGAAGGAGAGGTGGTGGCAGGTATGGAATAAGGGATGGTGGTGGGAGAAGAGGTCGTCGTCCTCCTCCCCTTCCACTGCCTATACCTGTGCCCCTCTCGTCACCAACACAAACTCCACCCACACCTTCGCCATCCATATGTTACACTTCCACTTCTTCTAGCAGCTCTAGCACCTCCAGTTCATCCTCCTCTTCAGAATCAATCTCCAGATCTAATTctccctcctcttcatcatcatacACATCATCACAGAGCTTCAGATACCGGGCAGATGTACGAGACCTATATGAGGACTATGACACCGATGAGcttacagaagagtcaagcttgcTTTTGGGGAGGAGAAAAAGTCGTTCACGTATGTCCTCTCGTTCACTGCCCAGCAGTCCTCCACCACCACCTATACCACCCCGAAAGCCTTGTGCACTGCGGCCGCAGGTGAGAGACAGAGCAGGCAGCCAGCTTGCACAACTTCAAGAGTGGTGGGCATCTTGGGGTGAGAAAGAGAAAGGCAGAAGGGCAGCTGGAGATAGAGAAGTTAAGGAGGAGAAACGGCATCACAAAGAAAGGGAAAGGGAGAGAAAGAGGAGGAAGAAGggtagaaagaaaaagaagcgAGAAGATCGTGAAAGAGAAAGGGAACGTAAAAGACgtaaagtgaaaaagaaaaagaaaaaagaagagaaggccagaaaaagagagagggaaaagCGATCTGAACAAGAGGAGGTAGATGTGGACAGAAAAGATGTGTTCGAAAAAGGAATAGGACAGGAATACTCTTCTTATCCTGCACCAAGACGCAGTTCTTTCAGAAAAAAGAGTGAAAGCTCTACAAGGAGTTATGAATGGGATAGAGATGCTGTTAAGAGAGACAGGGATGATCAAGGAGGAGATGATGAAGAAGGCAGTAGGGGAAAGGAAAGGCATCAAAGAAGCCCAAAATCTCATCGCCACTCCAGACCAAGGTCCAATAACAAGCATTTTTCCGCTTCAAACAAACCTCCTTCGACCGTTAAATTTTGGGGTAGCGGGAACCCAACTTCTGAGTCGCCATCGTCCTTTGTGCCCCTGCTTCCCATTGCCTCTAAAAGACGAAAATCTGTGGGAACTGAGAGAGATGAGCGAGGTAGAGGTGGAGAGAGTCGGCCTCTTTTAGGTAAAAATGGTAGAGGTAAGCCTTGCTCAAGAGAAGGCCTGTCATTTCACGAATGGGATTCTGAGGAAGAAGATGAGGAGTCTGAAATGGAAAGAAATAGGGCAGAAGAACAGGGGAGACGACGGGAAAGTAGAGGAATGGACTCAGAGTCTGAAAGGGACAGAGAAAAAACTGTTGAGATATACACAGATGATGAAGGTTCCTCAGGAGAGTTTGGTAAGTTTGAGAGATACTGGGAGGGTCACGAAGGAAGGGCAGTTGGTGGCATTGGAGGGGGAGGATGGTTTTTTGGCACCTACCCTGCCAGAGAAAGAGGAGGTAGCATAAACAGTAGAGATGATTCTTTTTTGGGATGGGGTGGAGGAGAAAGTAGCTTGGGGTTTGGTACAGGATGGGGATCAGGAGGCTTGGGATCAAACCAGTGGCCTCAAACTCCTTTAACTCCTCCACCTCCACGGAGATACTGGTCTGTAGATAAATTACCAGTCAAGACTGAAAAGAAATCTAAGAGCAGGTCTCAAGAGAAGAGTCGAGGCCACACGTCCTGTTCGTGCCAGTCCCCCCATCACTCCGCCAGCGCTCACTCTAAATGGAATCGGGTCACTTCTAGGAGTCAGGAGGAGCTCCTCCCCCACTGCCACAGTTTCAGCAGCAGCGTCAGACCTAAACGGCAATCATCGAAACAGGATCGGGCTCAGAGCCAGGCAAAATCTGGAAGCCAGTCCAACCTCCACAAGGTTGCACAAAGACCCCAACGCGCAGACCGGTCCAGACAACCACCGTCCCCTCCTCAAAGCCTACCGCCATCTTTACCCTCTCCAATGGTTCCTGCACTCCCAGCACCACCCTCTTCCTCTCATCATATACACGTACCTCCACCTACCTCCTCCTCCTCAGTTTCCTCCCCATCAGTTATCTCATCTACACCCGGTGCACCACAGCCCTCCTCATTGTCCTCCTCTAGTGCTAAGCTCCAATACCAGAAACTGCGATCAGTTCCCCAACCCCAAAGGTATCAATCCCCACATCTTCCCCTTAAAACCAAGAACATGTGCTCCCGTCGAGGCTCTGCTCACTTCTCTAGTGTGGAGAGTGAGGTCTGAGGAACATAATTAAATGAGGAACATCAGCAAGCAGCCCCTACGGGCAATCAAGTCACCTGCTCACACCACAAACTGTTAACTGTTCAAAGCAGTCGAGTTGGGTTGTTTTTGTGGCACCCTTCTCTTGCACAAAGCTCTAATGCTCCTAAGAGACAAACCTGGATTGGGATGTGACTGAAAGTGTAGCCCTTTCTTTTTACTTGTATAAGAATGGAATACTGCCATGCTGACAAATCTTGTCAATGTAAGAGAGGCTGTTCATAAGGGATTGGCTTTGCTTCTCTTACGTCTTGGGGGATTTAAGGTGGAGCTCCGATAATGTGGGTAAATGTGATTTTCTGTGGAATGATTTTCTGCTTGATGGCTCAGGAACGATTTTAAGAGGGGAGATTCTGAGGTCAAAATACAAAGCCCTAATGCCCCACAACCACCTTTTTTCTCCCTCACTTGCTCTCAGAGCTCTGAATCATGTAGTTGTTGTGTgtatttgttcaaaatatctCAAGGGAAGCATTCACAAAGGAAAGTagcaatccatttttttttttctctcagcacATTTTTCTTGACCTCCACCTTCTGCAAACCGACATATAGCATTCTGTGTGTTGTTGTCAGTGTTTGTATTCCTAGCAACAGGGTAAGTTAGCCATGACTGATCTCATATTGGCTTACTGAAGCTGAATGCCAAACTCACGTGGAGCTGATGTACAGTCTTTTTCTGTTGAAATCATTTCACTGGTCTTCATGTCTCATTCTAGTCCCTTGAGCAATACATAATTAACTACAAACAGCAttcaatacatatattttatatttaaaagttattttattatatatattatatatgttttgtGATCTGGTTCCAAACGGTTGTGTTATTAAAAGAATATAAGCACTGTGCTGTATTACCGTAGGGCACATGCAATGTTACAACTACCTATAATCAGTGGAAGCCCTTCCCTTCTCGACTGAATGTACATGTTGCCATGAGAACACAGTGCGCTGCAACCAAGACACTTTTAAAATCGTAGCTTGCTTGGGGGAGACCTTCTCATCGGAGCCGGTTAGATTAGCTTTGGACGCTGATGTTGTGAGTGCCAGGATGACAGGGCTAGCCGTATTGCAGCACTGTACTTGCTAACCGAGTGTCATCATTCAGATAGCGATAACTGAAGGAGAGCACTGTTTACAGTTTAACACTGTGTTTTTACACCTTTTTTTACAAGCTGCTCTGCTCTGCCATTTATTATCTCCGGACAAGATATTCATACTTGCTTAGCAAGTTTGCTTAAGCTGTAAAAGTAGCAGCAAAGATAAACTGGTCAAAAATAGAGTTGCAATTTTATGCTTTTAATAGACATATCtgttcagtaaaaaaataaatatatatagccaGAAGGAGTATTCTGTTAACTGTGAGGAAAAGACTGATTAGCAAACCAGTCAGGTAGATCTTTCTTTAATTTTGCTTTTACCATTTGTTAAAAGCTAGCATCTTGAAGTGATCGCTATAATCGACTGTGAATATTGCTAAGGGCAATGCGTGTTGGCAGCAGGTCTGAGTCAActatgttgtgttttattttgtttaaacgtCAGTTAGCAACGATTTCACTgtctttttgagtttcttttgttttagAGTAATAGTCAGTTGCCGATTTTTGTAAGTATGCTGCCATGACAAGGCCAATAAACactacactcacaggccactttattaggtacacctgtcaaactgctagttacgcaaatttctaattggccaatcacatggcagcaactcaatgcatttaggcatgtagacatggtcaagacgatcttctgcagttcaaaccgagtatcagaatggtgaagaaagggaatttaagtgactttgaacgtggcatagttgttggtgccagacaggctgatttaagtatttcagaaactgctgatctactaggattttcacgcacaaccatctataCAGCAAATGGTCcaaaataaccactcgttacaacccagCTCCAACCTTGGGTCATATTGCGCATATTGAGTCATCTcaaggtttcttgaacatgacaatgtgttcattgttctcaaatggcctccacagtcaccagatctcaatccaatagaacacctttggggtgtggtggaacgagagattcgcatcatggatgtgcagctgacaaatctgcagcaactcttaggaatatttccagtaccttttggaatttatgccacaaaggattaaggctgttctgaatgcaaaaggggtACGGTataagtaaggtgtacctaataaagtggccgtttagTGTATATATTAAACAAGTTATCTTTTTTCTTCAGAATTCTTCAGAACAGTAGATGTTTAAATCACATTAAACTCAAAACCAACCTGTGGTTGTTTTgatctgattgtttttttttattatttattattatctattgttttttattaatcataaattcatgtaattttttatgtaaagctactttttttttactttcagacATGGCTTTGACTAACTTGGGTTTGAAAAGTGTTATTTCTATatgtatgaatttattttttacagtgcatttttgACTCAGAACCGCGATACAGTCCAACAGGCtaattgttgtgtgtgtgtgtgcgcgcgcgcttgTATCTGCATCTGAGCCATATTAAGCTTATTTGTTGTATGCTGAGCTTTTTACTAGTATTAATAAATTGGGGTTAATTTCGCTGTCATGGGCTAAACAGTATTGACAAATGGAGTACTAGAAAAATGgatggtttttgttttttaaacagtttGGAGCAATCGGGATAGCAGATCTAACACAAATCATGTCAGAATCATAACGCTCTGCCTCGCCGTCATGGGTTTCAGAGTATCTCTATGTATTTTGACATTAACAATTTGAATATTTGGCAGCTTATGTATGTATATCCTTTTGACTCCAACTTTGTGTAATACGTGTCTGGATTACTTTATATATAGATGTACCTCATATACGTGTTTGTGACGTTTAGATAGCAATAGAGAAATAGCTGTTCAGCAAAGCAGTATAGCTGAAGACAACAGTATTGTTTTCAACCATTTATTTTGGCGGACTCGATAACTAAACAGTATGATCATGTTTTAGCTGCGGAAAATAATCTTCACCTCTCTTTCCATTTTGATACGCTTATTAAATTCAGCACAGCGCTTTGATAACATTTACAGGCTGAATCAGCAAGGACGTtttcttctcctttgttttttgtcGAACAACAAAATATCAGGCATATTGCACAGAGTAAAACCTGCCGCCAATCAAGACTCTTCAAAAGGCCTTTCTCTAGACATGTGTCTTGTTGTGTTGATAGTGTCTTTGACAGTAAATGTTTCGTTAATTTGTTCGTTTACGTTTATTACTCTAAGTATACGTCTCTAATCGAAGCAGCAGCATATGAATATATACAAGACATATAGATATAAATGATATATTTCAACAAagaacatatataaatatatatatatatatatatagaatgtttATCGACTAAATTGATTCTCTTTGAATTGGTCTTCTTTTGTCTCGTTGTCCTCTCTCGTCTCATAACAGCTGACATCAGAGACCAGTCTTCAACTGTGTTTTTATGAATAACATCGACCACGACAAGTTTCTGTTGCGAATAACCAACGCTACGAttgcggtgtgtgtgtggtgaaagTGTGGCGATGCAACTTTTGAAGTGTTGTAAGACGGAATCGACCCGGCTCTGTCTAAAAAAAGCTTTGCGGTCTCCATGCGTGTCTCACACACAGGTCTGGCTCTtggaaagtgtatgtgtgtgcgctctGTCTGTGCCAATCTGCATTGTGAAACACATGCGATGCTGCTCTGTAATACTTTCTGATAATGTAGCTGAGCAGAGCCAGTTATGTTTTATGCCACTCTGTGCCAGGACGGTAGTGCCCCCCGGTACCACTGTGTTAGGTTTTGTGCCATATACTCCTCTCATTCGGGGAGCCTCACAGGGGGGACCACTCGCTGGGCCGCTCGACCACGGGAGACTATACTATGCTGTGCTGCGAGCAGAACAGAATAAAAGACTTTTAATACAACAGTGTTCGCTCTGTTTTTCTTGTTTTCAGCATGTGTTcgtcagagagtgtgtgtgtgattgacagCCCAAAGCACTGAATAACTGTGTAAGGCTTTGTTTTCTAGGTTTCTGGGGAGAGACGTCTTGAAAGGAAGGAATGAAAcgactttttaaaacactggtGAGGACACCTGGCATTTTAATGGAAATTTTACGCAGAGAATTCCTAATAGGCTTTAATGGAGTtctttagagcagtgtttctcaaccacactcCCGGAGGACcaaccaacactgcatgttttggatgtctccttcagtcctttcagtctctgctaaagaCCTGATAagctgaatcaggtgtgtttgtttacagagatgtggaaaatgtgcagagctggtggtcctccaggaatgtggttgagaaacactgctttagagtTTGGggttatcttaaaaaaaaaaaaaaaggacatttcTTAGCAAATTTATCAGAGCTAAGAAGTCAGAACTCTGCTGTGTCCGGTATTTTAGCaacttgtatttttatttataaattaatttagttttatttgaattCTGGTTTCATTTACTGTAagcttttattttatgttcaattattTAAGTCTTGTACAGC

Function

GO:

id name namespace
GO:0060079 excitatory postsynaptic potential biological_process
GO:0006811 ion transport biological_process
GO:0060291 long-term synaptic potentiation biological_process
GO:0098839 postsynaptic density membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0017146 NMDA selective glutamate receptor complex cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0004972 NMDA glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-124 Predicted to enable NMDA glutamate receptor activity. Predicted to be involved in excitatory postsynaptic potential and long-term synaptic potentiation. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of NMDA selective glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Is expressed in presumptive neural retina; retina; and somite. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 46. Orthologous to human GRIN2D (glutamate ionotropic receptor NMDA type subunit 2D).

Ensembl:

ensembl_id ENSDART00000193016

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029757 lncRNA downstream 3023 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 226454 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 300450 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00030167 lncRNA downstream 300587 9605861 ~ 9609375 (-) True XLOC_014570
TCONS_00030165 lncRNA downstream 449633 9457546 ~ 9460329 (-) True XLOC_014566
TCONS_00028835 lncRNA upstream 270785 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00028866 lncRNA upstream 815980 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 816052 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 832591 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 1176619 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028814 mRNA downstream 27141 9840771 ~ 9882821 (-) False XLOC_014577
TCONS_00028815 mRNA downstream 42961 9842021 ~ 9867001 (-) True XLOC_014577
TCONS_00028812 mRNA downstream 79997 9813287 ~ 9829965 (-) False XLOC_014576
TCONS_00028813 mRNA downstream 79997 9817120 ~ 9829965 (-) True XLOC_014576
TCONS_00028810 mRNA downstream 123048 9732350 ~ 9786914 (-) True XLOC_014574
TCONS_00028820 mRNA upstream 133973 10177115 ~ 10196370 (-) True XLOC_014582
TCONS_00028821 mRNA upstream 158028 10201170 ~ 10207103 (-) False XLOC_014583
TCONS_00028822 mRNA upstream 158028 10201170 ~ 10214264 (-) False XLOC_014583
TCONS_00028823 mRNA upstream 163373 10206515 ~ 10214265 (-) True XLOC_014583
TCONS_00028824 mRNA upstream 174456 10217598 ~ 10243148 (-) False XLOC_014584
TCONS_00028791 other downstream 1057307 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2084429 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028762 other downstream 2441646 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028751 other downstream 2632369 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028719 other downstream 3670973 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028819 other upstream 80091 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028825 other upstream 195311 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028853 other upstream 593227 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 649024 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other upstream 662317 10705459 ~ 10705475 (-) True XLOC_014600

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000321_03937712_03954703.mRNA True 4985 mRNA 0.47 10 CI01000321 3937432 ~ 3955589 (+)