RNA id: TCONS_00028853


Basic Information

Item Value
RNA id TCONS_00028853
length 1634
RNA type nonsense_mediated_decay
GC content 0.47
exon number 9
gene id XLOC_014597
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10636369 ~ 10648523 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACTGTGTCAGCAAACATGGCCACCTTAAGCTCGAAGCCAGCCTCACGCTACAGTGTTTCTGACTGGGCAACTAACAATAAGCAAATGTCAGATACTGCTGAACACAAACGCAATGTTTCACACGAGATACGACAGGAAGGAAGAGCTCTGCGTAACGAAACGACCAATAAGACAAGCTGGAATGAGTATGACAGCACCCGGAAACTTAGAGACAGAATTAATGACATCACACGCTGGAAGGAGAATCTGAAAGCCTGTGCGCAGGAAGTGGATGAAGAAATGGACGCTCTCACTCTGTCCAAGGAGGAGATGGAACGAGCCCTTGCAGCCACAGTTCTGCCTCTTGAAGTGACCGCCGAGTGCTTGAACCTGAGGGAAGGCCGTCGTGGGAAGGAGCTGGTCAGTGACCCAGTAGAAGCTGAACTTAAGAAAGAAGTTGAGGTGATTGATGGAGCACAACGTGTCCTTCAACAGTGCATCGATCAGGCCTTTGAACAGCTGTGATCTTCTCAGTCGTCTACAGGAAGCTCGGCAACAGCTGACCATTGACCTTCAGGATAAAATAGAGGCCCTCGATGTGGATATGTCATGCTTATCTCTTACTATACAATCACCTGAGATCTCACTGAAGCCTAACCCTACAAGAGTGCCCCCTGGTTCCACCAATCCCCAGCAGTGGGAGCAGTTCAGCCGGTACAATATTAGCCGGGCAAGGGAAGAGATGCAGGTCTCAGTGCAGATAAGAGAAAATAACAGCATCACAAGAGCACAGGTGCAGAATGAACTGGAAGCCCAACGAATGTCGGTGGAGTTTGCGCTCCGTAAGCGAACTCACCACGAGGAACAAGCCCATCATGATATGCAATGGCAGCTGAAAACGACTCAAGATGAGATTGCTGAGCTGGAGAAGGATATCATTGGCCTGGAGGAGGACCTGCAGGCTAAGACAGCGCCTCTAAAGCTGGTCCACACCCGTCTGGAGAACAGGATAAAGAGACCTGGCATGGACTTGTGCCGAGATGAGGTACAGTTTGGATTGGTGGATGAAGCCAAGCACCTGGAAGCCACTATTCTGGCACTGAAACAGAAGCTAGCACAGGCCCAGCACTCTCTGCAGTCTCTGAAGCAGCATGAAGCTCAGATGATGGAAGAACTGTCTCGTAAACAGGATGCCTTGTCGCTGGAGCAGCGCAGCAACCAGACCCGGCAGCGCTTGACTCTGGGGGGCACGACTGAGGGTCTGCCTTCAGCTGTTGTGCCCCTTGCCAACTCTAGTGGCAGACACAAGCTGGTCCTTGCTTGAGTTGATTCCCTGATTCTTACTTCTGAGGTTATATTTACAAGGGGTGTGACGAGACGCTTACTCCACAAGACGAGACGAGACACGAGATTGGGTTCACGAGAACTAGACGAgattttttatacaatttttttgCAATCCTccatgaaatatattttatttaactgaaaaaaaaaatcacaaaatgctAAACTATTTAGGTGTTTTTTAAAATCAACTTGTAATGATTTTACTTCAATTTTATTAAATTCTATGCTGTAAAGggcatgcaaacactgcaaactATTTTGCTTAcatatgaatggaaaatagtaTTTATATGTAACAAAATA

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060294 cilium movement involved in cell motility biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005929 cilium cellular_component

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040113-1 Predicted to be involved in cilium assembly and cilium movement involved in cell motility. Predicted to be located in motile cilium. Predicted to be active in microtubule cytoskeleton. Is expressed in Kupffer's vesicle; otic vesicle; pronephric duct; sensory system; and spinal cord. Orthologous to human TEKT2 (tektin 2).

Ensembl:

ensembl_id ENSDART00000135102

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028835 lncRNA downstream 317407 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 729430 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 952861 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 1026857 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00030167 lncRNA downstream 1026994 9605861 ~ 9609375 (-) True XLOC_014570
TCONS_00028866 lncRNA upstream 212300 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 212372 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 228911 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 572939 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1487969 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028852 mRNA downstream 4887 10630679 ~ 10631482 (-) True XLOC_014596
TCONS_00028851 mRNA downstream 8617 10624644 ~ 10627752 (-) True XLOC_014595
TCONS_00028850 mRNA downstream 23595 10611788 ~ 10612774 (-) True XLOC_014594
TCONS_00028849 mRNA downstream 82017 10541772 ~ 10554352 (-) True XLOC_014593
TCONS_00028848 mRNA downstream 82129 10541772 ~ 10554240 (-) False XLOC_014593
TCONS_00028856 mRNA upstream 2602 10649424 ~ 10656796 (-) False XLOC_014598
TCONS_00028857 mRNA upstream 2603 10649425 ~ 10656701 (-) False XLOC_014598
TCONS_00028858 mRNA upstream 2604 10649426 ~ 10656667 (-) False XLOC_014598
TCONS_00028859 mRNA upstream 6823 10653645 ~ 10656676 (-) True XLOC_014598
TCONS_00028861 mRNA upstream 45762 10692584 ~ 10730488 (-) True XLOC_014599
TCONS_00028825 other downstream 394258 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028819 other downstream 513022 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028818 other downstream 623755 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028791 other downstream 1783714 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2810836 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028860 other upstream 45344 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other upstream 58637 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028867 other upstream 212395 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028885 other upstream 546427 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028897 other upstream 1078674 11725496 ~ 11725631 (-) True XLOC_014620

Expression Profile

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