RNA id: TCONS_00028850


Basic Information

Item Value
RNA id TCONS_00028850
length 987
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_014594
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10611788 ~ 10612774 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCAGTTTGGACTACCAGCTCCTCTTGTCATTCTACATCCTTACCTTCTTGATCGGCCTCCCTGCCAACATCCTAGCCTTCATCACCTTCTGTCGGAAAGTTCACCGCAAGCCCACCCCCATCGACATCCTCCTGCTAAACCTGACAATATCCGACCTCATCTTCCTCGCAGTCCTGCCCTTCAAGATGAAGGAGGCCGTTGACCAAATGATCTGGAGACTTCCCTTTTACCTGTGCTCCATCAGCAGTTTTCTGTTCTTCTCCACCATCTACACCAGCACCTTATTTCTGACCGCGATTAGCATAGAGCGCTATCTAGGCGTCGCATTTCCAATCCGATATGCTTTGGGCCGCCGACCACGAAATGCTGTGATCGCCTGCTGCTTCCTCTGGCTTCTGGGATCTCTAAACCTCAGCATTGTTTACATCGTCCCATACATAGACTCGAGCGATAACTCCACCTACAGCAAGCTACAGCTCAATCCCCATGTGAGAAACTGCTACGATAACTTCACCTTAGAGCAGATGACCATTCTGCTTCCTGTTCGCCTGGAGCTTTTCCTCCTGCTTTTCTGTATACCCCTCCTCATCTGCTGCTTCTGCTACATCAACTTCATCCGAATCCTCTCCAACCTGCCCCATCTGGGACGGCGTCGCAGACTCAGAGCCATTGGGTTGGCGGTTGGGACACTCTTGGTTTTCACCATCTGCTTCAGCCCTTATAACATCTCACACGTGGTTGGTTTCATCCATCGGAATAGCGAAGGTTGGCGACACTTTGCTCTGCTATTCAGCACTCTGAATGCCTGTTTGGACCCCATCATTTTTTACTTTTCCTCGGCAGCGGTTCGCAGTGCCATCAAAGCATGTGTTGATGGTCTCAAAGAGAAGATGCACATTGTTAGATGCAGAACATGCTGTCCTGCTCAAACTTCCAAAACTGAGGCTTACAAGGAGACTAATCCACCGGTTGACCTGGGGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-813 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to several human genes including FFAR2 (free fatty acid receptor 2) and FFAR3 (free fatty acid receptor 3).

Ensembl:

ensembl_id ENSDART00000091898

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028835 lncRNA downstream 292826 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 704849 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 928280 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 1002276 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00028866 lncRNA upstream 246348 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 246420 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 262959 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 606987 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1522017 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028849 mRNA downstream 57436 10541772 ~ 10554352 (-) True XLOC_014593
TCONS_00028848 mRNA downstream 57548 10541772 ~ 10554240 (-) False XLOC_014593
TCONS_00028847 mRNA downstream 60394 10537443 ~ 10551394 (-) False XLOC_014593
TCONS_00028846 mRNA downstream 60394 10537443 ~ 10551394 (-) False XLOC_014593
TCONS_00028845 mRNA downstream 133559 10454305 ~ 10478229 (-) True XLOC_014592
TCONS_00028851 mRNA upstream 11870 10624644 ~ 10627752 (-) True XLOC_014595
TCONS_00028852 mRNA upstream 17905 10630679 ~ 10631482 (-) True XLOC_014596
TCONS_00028854 mRNA upstream 23750 10636524 ~ 10648523 (-) False XLOC_014597
TCONS_00028855 mRNA upstream 23915 10636689 ~ 10646808 (-) True XLOC_014597
TCONS_00028856 mRNA upstream 36650 10649424 ~ 10656796 (-) False XLOC_014598
TCONS_00028825 other downstream 369677 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028819 other downstream 488441 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028818 other downstream 599174 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028791 other downstream 1759133 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2786255 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028853 other upstream 23595 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 79392 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other upstream 92685 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028867 other upstream 246443 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028885 other upstream 580475 11193249 ~ 11193363 (-) True XLOC_014611

Expression Profile

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