RNA id: TCONS_00028847


Basic Information

Item Value
RNA id TCONS_00028847
length 5130
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_014593
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10537443 ~ 10554352 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTATATTTCCTTGCTGCAAAGTCTCAGCGTGTGTCAGGATGTACAGCTTTATGGGCGGCGGTCTGTTCTGTGCCATTGTGGGCAACATCCTCATAGTGGTCTCCACGGCGACAGACTACTGGATGCAATATCGCCTGTCAGGCAGCTATGCCCACCAGGGCCTGTGGAGGTACTGCATGGCCAACAAGTGTTACATGCAGACAGCAAGCATAGCATACTGGAATGCCACACGTGCGTTCATGATCTTATCAGGAATGGCGTGTTTTGCGGGCATCATGGCAGGCATCCTCTCGTTTGCTCACTTCTCTGCCTTTGAGAGATTCAGTCGTTCCTTCGCTGCGGGAATCATGTTCTTCATCTCCACTTTCTTCGTGCTTCTGGCCATGGCGATCTACACCGGAGTAACCTTAAGCTTCCTGGGCAAGCGATTCGGAGACTGGCGCTTCTCCTGGTCCTACATACTGGGATGGGTGGCTATGCTCATGACCTTCTTTGCAGGCATATTCTACATGTGTGCCCACAGAATGTATGAATCCAGGAGAGTGGTGGGAAGTCGCTAATCTGAAGAAAGAAAAACTGCGAGCAGCATAATTTAGCAGATACACGATGAATGCCTTATAACATTATGCCTTTAAAGCACTGCAAAAACACACTAGCATTTCAAAAAtagcattaacattttttttttttacacaagcaaatatatttgtataatccTGCACAGATAAATATACCAGTCTTCACAGATGTCTATTTcacttttcataatttttttcaataaaactcTTCATCAAATCAAAccgatttctgtgaaaatctgtCTTGGGGCACTGCGATAAATTGACTGCAGAGTGCAATGTTATGTAACTGTTGTGGTTTATAAATGTCAGTCTGGCAGATGCTTTACAACTTGTAAGCATCTATTTCACCATGCGCCCGCAAGTATGAGACTTGCAGTGTCACGCTAATTACATAATCAGCGAGCGTTGCACATCCTGTGTTAAACACGAAAGATGAAAAAATAACCAAGAAGAAAAAAGTTACAGATTCAAACAGGGTGCACTTTTAGACCAGTAAATGTGTATTAACattggtattttattttttgttcatttgtttgccgGATATTTACTTTATTGTGgctcattttcatcatcacagtgcttttaaatcttaaaaatgtAGATTTACGAATTATTTTTTGTCCAACgggcaatttttttttgtcatggctAGTCTCTTACAGacaaacatcactagtctctctttTTCTAACCCTATAAACTACatcatgtatgtttgtgtgtcgaTACCCTGCTGCAGTAATTCTTGTTATGCCAGTAAATATATAGTACTGTTTCACTGACATCACACCAGGGTGAGCTGATTTCTGTTTATAGGAGTGGATTTTAGATGGTCTTCTTTTCTTTAAATATCTTCTCTAAGCACAAAGGGGAAGGGAAAACGGAAACATATTTACAGAGAATGCATTCATGGGTCTGTTTCAATGCTTATTTGCATATGAGCATATTTCAATGCTCGTTCGCACATATGTAgcatattttaatattcattcacaCTTAACTTATCTCacactcaaaaatgttttgtGATTCAGTGTACCCATCCTAGAGTATAAAAGCTGTGGTATACTTGTTATTATTTGCTGTGAAACTTTTTCATGCAAGACAGTAAGCCattactttctttttttgcttCAGAGCTTATATCTACATCTTCATGTTAACAAGCAAACAGAGACAGGCAGTCATACACAGTCATTGAAATGTAGTAAAACACATTAATCATATTACATACAGTTACGTCCATATTTATTTGGATATTGACACAAGTCTAagatttttggctctatacaccaacactatcgagttaaaacaaaacaaacaagatgtgctttagcTGAAGACTGTCAGCTTTAGTTTGAGTGTGTTTACATCCTGGCGagcgctgtaggaattacaacagtttacaTATGTGCATCCCTCTTGtaaagggtccaaaagtaatcgGATAATTGGCTTCTCAGCCGTTCTATggtcaggtgtgtgttattcccctcattatcccaattacaatgagcagataaaaggtccagagtttatTTCAAGTGTTCTATTTGCAtatggaatctgttactgtcaactctcaagatgagatgaAAAGAGCTGTCGCTATCATTCAAGcaagcaacacaggctcattctgaaaacgtagtcctgtgaacgtttctggagactatGCTGCCACAGGTGTGTATGGCTGgctgcaattaatttttttaagggaatgctacagggcggtatgacggcgttccttttcgcgctaaccagctgactgcttacctccgtgtgtaGGGCTTTCCCGTTGCAACCAGTTTTGTCTAGTTAGCTCGTTGTGTacattggcagacttgagacgcaaagAGAAGTTGACTACAATGACGAcgacgatggggttcgagtccagggaagagcggttccacaaatcaggtaagacaaaaacagaatccaaaaaataaaaaagaacaagtGAATAactggtgagaatgtggtaaaatctaaaaatgtggggATAATcaaatgagggcttttctttttctggacgccttttgtaaaccgtcggttgggtttagggaagtaattGGGTAGCtgggtcaatcgataaaattggttgggtttagggaagaaggagggtgggccAGTTGACTGGATTGGTCTGCCAGCCATTAAGTCATTCCGTCAATCAGACAGGCAGTCAGTCAGACAGAaaatcagtcgacagcggcctctggtgagttTATGCTAGAACATAgtgcgcgaatggcactcacaagagaaatttgagatatgaaaaagcgcacacaggaATATGTTTACCTCAGGACGTATTTCGCGATCTCCAAAAATGTCCaagggactatgttttcagaatgagtctgggttgcaagcaagccatcattaggctaaaaaaaaaaaaaaaacccatcagaAAGCTAGCAAAAGCATTAGATGTGGCCAAAACAACTGCTTTGAAcattcttaaaaaagaaagagcGCACCAGTGAGCTCAGCTACACCAAAAGAACCGGAAGACCACGAAAACAACTGCAGTGGAAAGAATTCTTTCCCTGGTAAAGAAAACACCCTTCATAACAGTTgaccagatcaagaacactctctgggaggtatgtgtatgtgtgtcagagtcaactatcaagagaagactacaccagagtgaaGGCTTTTTAGAACTCTAttctggccttcctgtttttgagaatcaccacaagatgtaaaccattggtaaacctatggacagatgagatcaagatcaacattggtacagagtgatgggaagagaagagtatggagaaggaaagaaactgctcatgatcctaagcagtgaagaatggtggtagtagtgacatggcATGGGCATGTATGGCTGTAAATGGACCTTGTATTTATCTCCCTTATATATACAGTACCTTATATAtatctcttgtatttattgatgatatGAATGCTGATGAAAGCAGCAGGGTgaattttgaagtgtttcagtcaatattttctgtttatattaagcaaccaaagagtttttgaagagaaagaagtggaatgttatgcaatggccaagtccaTCACCTGAACTGAATGCGATtaagcatgcatttcacttgctgaagacaaaactgaagggaaaatgcacCAAGAATAAGCAGGAACTGATAACAATTGCTGTAGGGGCCTGGCAGAGCATCACCAGAGATGAAACCCAGAGTCTAGTACTTATCTATGTGTACCAGACTTCAGGATTGGCAactaagtattaaaaagtgaaagtttgatttaagattattattctgtcctatTATTTTTAGACcgttaacaagtgggaggcacttATCCAAACTGATATAATTTCTACaatgttcacctgatttggaagTAAATAGCCTCACATTAAAGCTGACAGACTGCAGTTAAAGCCCCTctattcatttaatttcaaattgATGGGTTTGGTGTATAAATCACGAACCATGCCAATTCCTCCACCGATTTCAATGCACTTTTGAGCTTGAGCACCAGTGGCATTGATTATTATGCTGCCATCATAAGTGCTCTATGAGGTTCCGCCACTGACAATCCCTTACTGTAGCTCTGATACAAGTCTTACTTAAGGTGAAAAGTATAAAGCCTTGCAGTGTATTTTTCTGAGGTAAATAGTCtactgttattactgaaatgtgtatattccatacaatgtGTGAAGCTGATTGGTTCTTGTCACTTGACTTGTGGTTCGCTTaaggcattctgaaaagttgagatgtttttaaCTCATAATGTTCTAGATATGCCAGGAAAAAACAAGCATTGCGCTGcacatttgcattaaaatttATGAACTTGCATGCACAAAAGGTGCAATATATGAACGTCCTCTGAAATTAACCAGAAGACCAGGCACAGTGATAGATTTTTCCCCTTTCCCCATTAAACACTTTGTGCTATTTAATGGACCAGACAAACAAACAAGAgagaaaaacaaagtaaaaactcTTAAAATCTATTTACACACTCAACAACTGCAGCCTTTGGAAAGGAATTACAACTTTCTTCTTTAGTGGACAGCTGGGACCGATTTTGACCTTCCTCCGTAAGTGCTCTATGAAAAATCCCAAACAAACTTTGCTTACAGAGCTGCCTAACATCCAGTCCCATGAAGAGGTACAACACTGGGTTAATGCAGCTGTTAAAATAGGTTAAGTCTGAAACCATTCTCCATCCTAATTTTACCACCTCATTGTCTTCATTTACAAACCTGACCAGCCTTAGAAAGTGATATGGAGCCCAGCATAGGAAAAAGGCACAGACCAAAACAGCAAGAATGCGAAGAGGCCTTGATTTGCCAGAGAGTCTCGTCCTGCGGATCCCAATAGCAGCCAGTGTGTAGCAGATAAAGATGACCAGAAAGGGCAACAGGAATCCACAGATGAAACGAATGAAGTAGTACACATACTTTGCTGAATTGTTACCCTCAGCTGTTTCATTCACCTGCAAATGAAAAGTACTGTAAATACACATTCacatatttgattt

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-104 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

Ensembl:

ensembl_id ENSDART00000186815

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028835 lncRNA downstream 218481 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 630504 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 853935 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 927931 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00028866 lncRNA upstream 307728 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 307800 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 324339 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 668367 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1583397 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028845 mRNA downstream 59214 10454305 ~ 10478229 (-) True XLOC_014592
TCONS_00028844 mRNA downstream 105309 10429810 ~ 10432134 (-) True XLOC_014591
TCONS_00028843 mRNA downstream 112303 10415484 ~ 10425140 (-) True XLOC_014590
TCONS_00028842 mRNA downstream 141760 10379248 ~ 10395683 (-) True XLOC_014589
TCONS_00028841 mRNA downstream 142512 10375782 ~ 10394931 (-) False XLOC_014589
TCONS_00028850 mRNA upstream 60394 10611788 ~ 10612774 (-) True XLOC_014594
TCONS_00028851 mRNA upstream 73250 10624644 ~ 10627752 (-) True XLOC_014595
TCONS_00028852 mRNA upstream 79285 10630679 ~ 10631482 (-) True XLOC_014596
TCONS_00028854 mRNA upstream 85130 10636524 ~ 10648523 (-) False XLOC_014597
TCONS_00028855 mRNA upstream 85295 10636689 ~ 10646808 (-) True XLOC_014597
TCONS_00028825 other downstream 295332 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028819 other downstream 414096 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028818 other downstream 524829 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028791 other downstream 1684788 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2711910 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028853 other upstream 84975 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 140772 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other upstream 154065 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028867 other upstream 307823 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028885 other upstream 641855 11193249 ~ 11193363 (-) True XLOC_014611

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU34386 True 240 lncRNA 0.44 1 CM030123.1 38017230 ~ 38017469 (-)