RNA id: TCONS_00028914


Basic Information

Item Value
RNA id TCONS_00028914
length 1137
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_014628
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12206158 ~ 12212796 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGTGGTCATCGCAGGAACTACATGTGAATCGATCTGGGAAGAGCACAGCTGTCACAAGCGTGCGGGACTACATATTACAAGCTCGTAGCTGCTTACGGATCTCATCTGTTCGCCAGAATGGCTCGTGGACATCAAAAAATCCAGTCTCAGCAGAAAAACGCCAAGAAGCAGGCGGAGATCAAGAAATCCAAAGGCCACGACCAGAAGACCGCAGCGAAAGCGGCACTGGTGTTCACATGTGCTGTCTGCAGGTCACAAATGCCAGATCCCAAGACCTTCAAGCAGCATTTTGAGAGCAAGCACCCCAAGAGTCCTCTTCCCCCAGAGCTGGAGGGTGTGGAGGCATGAGcggcccacacacacacacacacaccggactGGAGGCTGAGTGTATAAAACACCACATCGTAAGAGTCCTGATCTCAGATTTTATTCAGCAGGACACGATCGGCTCTTACCCGAGTTTTATACATGCATCCTCCTCTTCGCCGCAGACATGAATCCCGTGGATCAAAGACTGATGACGTTTGGCTTCCCTCTCAACACTGTTTCAGAGCACTTGCCTTGGCTACGATCAGATCAGTGTATTACCTCAACCTGCACTCACACGCTTTTCTTTTCTCATCTCGCTGGTGTAATTTAACAGATGAAGATGTTAGAGGAACACTACCAGTCAGTTGATCATCGATAATATAAATGTGGTAGTCTCAGACATATTTGTCTGCTTCTTTTGCTTGTTAGAAAAAGTCATAGGTGAGTGCAAATGGATATGGGAACGATTTCCCTCTACTTGACGTTTAGCCTGGGCTGGgaatttctctctctttttattttttactttaattttctttttaactaaCTTTGATTTACACCAAAAGAGAAATCTCAATTAGTCTAATACAAACTTGGTTTTCTGTCCACTGTAGACTGGAATCTAATGCGTATTCTGTAAAATCACTGGATGTGCCCGAGGTCACTGTATTCTTAATTTAATGTTGCTGCAGatctttttatttctctttggaATTGTCTCAAACAACGTCGCCTCAATGTTTGATATTCCTGCTCAAGCCACCTGGTTTCCACACCAATGTAATATATCTCTTTAATAAAGtttaactttgtttaaaaaaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-454 Orthologous to human ZNF706 (zinc finger protein 706).

Ensembl:

ensembl_id ENSDART00000078781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028909 lncRNA downstream 67419 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00030168 lncRNA downstream 978590 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 1329328 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 1341359 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 1345709 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028922 lncRNA upstream 185748 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 408130 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 754223 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00030171 lncRNA upstream 754223 12967019 ~ 13009415 (-) True XLOC_014635
TCONS_00030172 lncRNA upstream 973157 13185953 ~ 13188728 (-) True XLOC_014636
TCONS_00028912 mRNA downstream 12536 12164428 ~ 12193622 (-) True XLOC_014627
TCONS_00028906 mRNA downstream 60393 12121944 ~ 12145765 (-) False XLOC_014624
TCONS_00028908 mRNA downstream 60768 12132475 ~ 12145390 (-) False XLOC_014624
TCONS_00028904 mRNA downstream 127575 12030832 ~ 12078583 (-) True XLOC_014622
TCONS_00028903 mRNA downstream 240143 11955335 ~ 11966015 (-) True XLOC_014621
TCONS_00028917 mRNA upstream 84304 12297100 ~ 12324514 (-) False XLOC_014629
TCONS_00028918 mRNA upstream 84437 12297233 ~ 12322356 (-) False XLOC_014629
TCONS_00028919 mRNA upstream 84934 12297730 ~ 12315693 (-) True XLOC_014629
TCONS_00028920 mRNA upstream 149991 12362787 ~ 12392819 (-) False XLOC_014630
TCONS_00028923 mRNA upstream 185757 12398553 ~ 12404590 (-) True XLOC_014631
TCONS_00028910 other downstream 60393 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other downstream 69287 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028907 other downstream 74978 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028905 other downstream 159588 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028897 other downstream 480527 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028921 other upstream 173501 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028926 other upstream 420353 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028935 other upstream 1520372 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028954 other upstream 2962047 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 3814623 16027419 ~ 16027490 (-) True XLOC_014658

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU521676 True 100 TUCP 0.43 1 CI01000320 350103 ~ 350202 (-)
rainbow trout (Oncorhynchus mykiss) TU521676 False 6352 lncRNA 0.46 5 NC_048569.1 96824235 ~ 96831126 (-)