RNA id: TCONS_00028904


Basic Information

Item Value
RNA id TCONS_00028904
length 5285
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_014622
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12030832 ~ 12078583 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACTGATATGTGAGAAGCGAGCGAGACGGATGCCAGTGAGTCAGTACGAGCGAAAGAGCGAGCGGAGGACGGGACACACAGGACGGCCCGACTTCAGCCCGACAAAACAACTCCCAAAAGTAGCCGCCTTCCAACACCACACTCGgagtttttcacctttatttgttgcCTGTAATGAAATGCTTTTACGCGGATGACTTGAAAGatCAGGTCGAGATCCAGCCTGGTGACTCCAAACTGACACGTGTGTCCCAACTTGAGCTGCCCGGCTCAAGGGAGCAGCTTGCAGAGAGTTCACCGCCATGTCTTAACACCTCACGGTCCCCTCTGAAAACCCTGTCCCCCCTTCCCTCTCTCTCCCCTCCCTccccctcctcctcttcctcccctTCCCTCCCTGTAGACACTTCCCAGTCCTTTGGAAACCACAGTGCCTCCTTCGGAGAGATGAGTTTGCATCAGCAGCAGCAGGGGTCGGAGAGGGACCTCCCCTCCGCTGCCTCGTCCGTCAGTCTACCCTCTGTAAGGAAGACTCCTAAGAAGCGGCGTATCTCGCTGCGCTCACTGTTTCGTCGTCGTTGTGGGGATCCCAAATCCCGCAAGTCAAGGGCACTAGCCGCCGGAGTAGATGGCATTGCCAGCGTGGAGAGCGTGCACTCTGAAATGTGCCAGCAGCAGGATCACGCTTCGGCTCTTTCTGCGGCCGGTGTGGCCTACACCTCGTCTTCATGCTCCTCGTCCTCAGGCTCCACCTCTGAGCTGCTGGAGTGTCCGCTGTGCCTGCTGCGCCACACCAGAGACCGTTTTCCTGACATCATGACATGCCACCACCGCTCGTGTGCCGACTGCCTCCGACAGTATCTCCGCATCGAGATATCCGAGAGTAGGGTCAACATCAGCTGCCCAGAGTGCTCGGAGCGCTTCAACCCCCATGACATCCGGATGATACTCAACGATCGGGTGCTTATGGAGAAGTATGAAGAGTTCATGTTGCGCCGCTGGCTGGTGGCGGACCCTGACTGTCGATGGTGCCCTGCTCCAGACTGCGGGTATGCGGTCATTGCCTTCGGTTGTGCCAGCTGTCCAAAGATCACGTGTGGTCGTGACGGCTGCGGGACTGAGTTCTGTTACCACTGTAAACAGCTGTGGCATCCAAATCAGACCTGTGACGCCGCTCGACAGCAGAGAGCCCAAAGTCTGCGGCTGAGACCCTTCAGATCATCCTCACTCAGCTACAGCCAGGAGAGCGGCGCTgctgCTGACGACATTAAGCCATGTCCCCGCTGTGCGGCCTACATCATTAAGATGAATGATGGGAGCTGTAATCACATGACCTGCGCAGTGTGCGGCTGTGAGTTCTGCTGGCTGTGTATGAAGGAGATCTCTGACCTGCACTACTTAAGTCCTTCGGGATGCACATTCTGGGGTAAGAAGCCCTGGAGCAGGAAGAAGAAAATCCTGTGGCAGTTGGGCACGCTAGTGGGAGCTCCCGTTGGCATTGCACTGATTGCAGGCATTGCCATACCCGCGATGATCATTGGGATACCGGTGTATGTGGGAAGAAAGATTCATAATCGTTATGAAGGGAAAGACATCTCCAAGCACAAGAGGAACCTTGTCATAGCCGGCGGAGTGACTTTATCTGTCATTGTGTCTCCAGTGGTTGCTGCTGTTACTGTTGGAATAGGAGTGCCCATCATGTTGGCATATGTCTATGGTGTGGTGCCCATCTCTCTGTGCCGCAGCGGTGGTTGCGGTGTGTCTGCGGGCAACGGTAAAGGTGTTCGTATCGAGTTTGATGATGAGAACGACATGAACCCTGGCACTGGAGCTGCTGTGACTGACACCACTTCAGTAGCAGAGACCAGGCAAAACCCCAGCATTGGTGAGGGCAGTGTAGGAGGTCTGACAGGCAGTCTGAGTGCCAGCGGGAGCCACATGGAGCGTATTGGAGCAATGAGAGACAACCTGAGTGAGAACGCCAGCACTATGGCCCTTGCTGGAGCCAGCATCACTGGCAGCCTGTCAGGAAGTGCCATGGTCAACTGCTTCAACAGATTGGAGGTTCAAGCTGATGTTCAAAAGGAGCGTTGCAGTCTGAGTGGAGAGTCTGGTACCGTCAGTCTGGGGACAATCAGTGACAACGCTAGCACCAAAGCAATGGCTGGATCCATTCTCAACGCCTACTTGCCTATGGACAGAGATGGGAACAGTGTGGAGGTGCAGGTGGATGTGGAATCTAAAAGAGGGAAGCTCCGGCACCACAGTGGCAGCAGCAGCATGGATGACGGCAGCAGTGGAGGCCCCGGGGCGAGTGCTTGCCCCTCTGGCTGTCTTCACGACGGCAAATGCGTCACTTCTCGCTGGGCCAAGGAGCCATCCTCCACTTCATCCTCATCATCTGGCAAGAAGAGTAAAGGAAAGCTGCGCAAAAAGAGCGGCGGAACCAAGATTAATGAGACACGCGAAGACATGGACGCACAGCTGCTGGAGCGCCGCAGCACCAACTCCAGCGAACTAGACTCTCCTTCTCTGAGCGGCAGCCTTCCGTCTGTGGCCGACTCGCACTCCAGCCACTTCTCAGAGTTCAGCTGCTCTGACCTGGACGCCTGCAGACCTACATGCTACGAGTCTCACATCCGCCATCCCAACACAGGCGGAGCGGTCAGCCCTCTTCCCGAAGTCGAAAACGACCGGCTGGAAAACTGTCCTGCTTCTGGGAGCCTCCCTCAAGCTATGGTAGCCCCAATCTCCCCCGATGGGGCGGCAGAGCGTCCTCTGTGCTACATTGCAGAGGAGAATGTGAGTTTAATGTGTGCGGCTAATGCGAGCCAGAGCTCGCCTAAAGAACGCAATAACAACCTTCCTCAGCCAGCTAGCCCTGTGCGCAACACCTGCATTCAAACCGAGATATAACCAGACGGGTCGACTTCACCCAAAATGCTTTCACAGCTAACCTCAACGCCCATTTTATTACCAAGGATTGCACACTGAATTGAAGATTTTGTTTTGGTGTTCTTCTTCGGGGGTTACGTGGAGGTTTTAACGTCCTGGTCTGATGGTCGATTGTTGAAATGTTGGAGAAGGCGCACCACTTTTTACACTGGTCAAGGGCAGGTTGTGCCTTGAGGTTTCAGAAAGTTGACCAAAGGTTACAGTTTGATTACCAGGCTTTGTTAAGACCTGTCGGTCTGCGCTTCTAGTTGGTCTAAAGCTTGGATATGGTTCGGAAAGTCAACAGATGAATGTAAGGCGGCAAGTGATGCACAGATACTGAGGATGATGATGCTGTTGATGATGTAGCTGTCAATCACATATGCCTCTTTCAGTGTTCTGGGTCGCTCTGATGAACAAGTACATAGATGAATCTCGCAAAAACGTCTTGCATAGTTCAACCCAAAATTAAAACCAGAAGAATGAGAAGAATGTGAAATAAAGCCTGTATTTAGAACAGGTTAGATCTGTGCTGACACAATTTCATGGTGATTAAAGAGggagttcacccagaaattaagCCAGCTCTAAACCTGTCTGTTCTGTGGGACATATCGACATTTTGAAGCCTGTTAGCAGCCAAACAGTTTAGTCcctcattgactttcattgtatttaaTGGGATCCAAAACTACTACTTTAAAACGTCATCATTTAAGTTCCACTAGAGATATTTTGCAGGTTTGAAATGGCATGAGGGAGTGTGAACTGTCCATTTAAGCATATTTCTCTTtataatttctaatttaatgtgTCAGATATTTTGGCTTTCTTTTATTTCTCTTGTAGGTAGTGATAATTCTCATTCTTATTAcgataatacagtatttttttatctCCCTGTATTACCATAGAACAATTATTTCAATCACCATAAAGGCAGTACTGCAAATAGTACCATGACTtgcatttattagttttattgcaGTAATAAGAGTGAGATttgtttgccaaaaaaaaaaaatgcaatattttcctaaaaaaatttCAGAAAGTCTTTTTCTTTAAGTAACATTTCCTTGATTTTGGGTTGGAATATGACATGACGTGTTCTTGACAGAGTTCATGTTACTGACCCGTGTATTCAGGCACCTTCaccacacatgtacacacatatacGCTCAGTTACCCAGCATATAGCTTTAGTCTGAGGAACCTGCACCTATTCAAAGGCAACGAGCAAGTTGAGAGGGAACCGActcccttttttttttcctgagatGATACAAGATGAGCCCATGAGGGACCAGGCAATAGCAGATATTTCCCTATTCACAGCAGTGATTCTTGTACATGGTTGagtgtttaattttagttttttttttcatcactgCTTGTTTTCCATTTTTGCGGGGAAAGTAGATGCTTTTGAGTTGAAGAAGCACTGAGAAGCTGAATGAAGTCGTATTGCGCCCCCTGCTGGTAAGATGGGGATAATTGACCAAACCCTCGTCTGGCATGTTTCAAACAAAGTTTCTTCAAAGCCAATTTAATGCTAATTTTCAATAGAGTTACTGTTTTGGGTGCAGTGGGTTTATATTTATGAAGCGGAAGGATTTGCATTGtttataaaagagaaaaaaaaaaactacgttCATTGTAAAGGATAAGATGGTAATCGCATTCAGGTTGTTTAAGTGATTATTTCTCTCTTTATTGTCATGTTTGTATCTGTATTGACTCATGGTGCCTTTTGGATCATAGAAAAACTGTTTGTTTCTCCGGTTTGTGTCTTATTAATTGAAATGTAATGGATGAGGCTGCATTGAATGTTAGCGAGGCGGCGTGGCATGGTTTCCTATCGTCTCTGTGCGCACGGTTATAAACTACACAACCGACCGCCTACCAAAGACAGCACTCAGGCTCACTGACGACGACGACGACTCGTCTCTTCAACACGCTCACCTCCTCGTCTCCTCGccttgtgtatgtgcgtgtgtgtgtgagagtgtgtgtttgcacTGTTCATCCCAGTCCTGTTCGCGTCTACAGCCGGGTCTCTTCCAAGAGTGGACTTTTCTTGCTGCCGTTCTGGTGCTGCTCAGTAATCTCTCGGAACTGATCCAATGCCACAAGctgctttgttttgttgtttattgttctttctgtttctttagtgttttttttttcttacgtTTTGAGCCTTCCTGCCCATTTCTGTTCGAATATTACTTCAGAGAGTAGGGCCGTTTGATTTCTAACTTGTTCAAAACAGCTtgatatttgtatatttgcttTATAATATGCGTGTAAATGCAtatctaaatgaaaataaaaacatgaatccaGA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-9414 Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF19A (ring finger protein 19A, RBR E3 ubiquitin protein ligase).

Ensembl:

ensembl_id ENSDART00000024193

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030168 lncRNA downstream 803264 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 1154002 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 1166033 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 1170383 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028835 lncRNA downstream 1711870 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00028909 lncRNA upstream 56208 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028922 lncRNA upstream 319961 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 542343 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 888436 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00030171 lncRNA upstream 888436 12967019 ~ 13009415 (-) True XLOC_014635
TCONS_00028902 mRNA downstream 53049 11952309 ~ 11977783 (-) False XLOC_014621
TCONS_00028901 mRNA downstream 55668 11948559 ~ 11975164 (-) False XLOC_014621
TCONS_00028903 mRNA downstream 64817 11955335 ~ 11966015 (-) True XLOC_014621
TCONS_00028898 mRNA downstream 80398 11897631 ~ 11950434 (-) False XLOC_014621
TCONS_00028899 mRNA downstream 80836 11897862 ~ 11949996 (-) False XLOC_014621
TCONS_00028906 mRNA upstream 43361 12121944 ~ 12145765 (-) False XLOC_014624
TCONS_00028908 mRNA upstream 53892 12132475 ~ 12145390 (-) False XLOC_014624
TCONS_00028912 mRNA upstream 85845 12164428 ~ 12193622 (-) True XLOC_014627
TCONS_00028913 mRNA upstream 127575 12206158 ~ 12212694 (-) False XLOC_014628
TCONS_00028914 mRNA upstream 127575 12206158 ~ 12212796 (-) False XLOC_014628
TCONS_00028897 other downstream 305201 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028885 other downstream 837469 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028867 other downstream 1170366 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028860 other downstream 1300354 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028907 other upstream 52462 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028910 other upstream 56264 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other upstream 58153 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028921 other upstream 307714 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028926 other upstream 554566 12633149 ~ 12633263 (-) True XLOC_014634

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000320_00264815_00284889.mRNA True 3165 mRNA 0.54 10 CI01000320 264519 ~ 285217 (-)
bowfin (Amia calva) AMCG00002667 True 4449 mRNA 0.51 9 CM030136.1 25556983 ~ 25573560 (+)