AMCG00002677 (stk3,LOC103394381)


Basic Information

Item Value
gene id AMCG00002677
gene name stk3,LOC103394381
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26026545 ~ 26030667 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002677
aaatTGAAAAAGCTGAGTGAAGACAGCTTAACGAAGCAGCCAGAAGAAGTGTTTGATGTTCTGGAAAAACTTGGAGAAGGGTCTTATGGCAGTGTATACAAAGCAATCCATAAGGAATCTGGTCAAGTTGTAGCTATCAAACAAGTGCCTGTTGAGTCAGATCTACAAGAAATTATTAAAGAGATTTCAATCATGCAACAATGTGACAGTCCCTATGTGGTGAAATACTATGGAAGTTATTTCAAGAACACTGACCTGTGGATTGTTATGGAATACTGTGGAGCTGGCTCTGTCTCAGACATTATAAGACTTAGAAATAAA

Function

symbol description
stk3 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within camera-type eye development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human STK3 (serine/threonine kinase 3).

NR:

description
PREDICTED: serine/threonine-protein kinase 3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002677 True 321 mRNA 0.38 3 26026545 26030667

Neighbor

gene id symbol gene type direction distance location
AMCG00002669 NA coding upstream 381516 25622325 ~ 25645029 (+)
AMCG00002668 NA coding upstream 407780 25609694 ~ 25618765 (+)
AMCG00002667 rnf19a,LOC102791892,LOC107698652,LOC106570794 coding upstream 452985 25556983 ~ 25573560 (+)
AMCG00002664 NA coding upstream 520263 25459801 ~ 25506282 (+)
AMCG00002663 LOC103371419 coding upstream 570771 25447921 ~ 25455774 (+)
AMCG00002676 stk3,LOC100711192,LOC103135175,LOC106938036 coding downstream 10620 26041287 ~ 26044337 (+)
AMCG00002675 stk3,LOC107724280,LOC107702102,LOC105907728 coding downstream 33954 26064621 ~ 26075449 (+)
AMCG00002678 nipal2 coding downstream 153032 26183699 ~ 26199261 (+)
AMCG00002683 rida,LOC102789025 coding downstream 203616 26234283 ~ 26241005 (+)
AMCG00002691 NA coding downstream 508502 26539169 ~ 26543912 (+)
G125109 NA non-coding upstream 164239 25854158 ~ 25862306 (+)
G125022 NA non-coding upstream 569658 25456656 ~ 25456887 (+)
G125011 NA non-coding upstream 697684 25328180 ~ 25328861 (+)
G125005 NA non-coding upstream 723390 25299701 ~ 25303155 (+)
G124999 NA non-coding upstream 887273 25138980 ~ 25139272 (+)
G125220 NA non-coding downstream 341912 26372579 ~ 26376125 (+)
G125288 NA non-coding downstream 623318 26653985 ~ 26655168 (+)
G125290 NA non-coding downstream 624572 26655239 ~ 26655457 (+)
G125296 NA non-coding downstream 631057 26661724 ~ 26662436 (+)
G125320 NA non-coding downstream 753115 26783782 ~ 26784610 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other upstream 642233 25374942 ~ 25384312 (+)
AMCG00002650 NA other upstream 1249730 24761884 ~ 24776815 (+)
G124863 NA other upstream 1603932 24422252 ~ 24422613 (+)
G124769 NA other upstream 2345160 23677935 ~ 23681385 (+)
G124689 NA other upstream 2736010 23152648 ~ 23290535 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 244647 26275314 ~ 26279137 (+)
G125219 NA other downstream 331545 26362212 ~ 26369525 (+)

Expression


Co-expression Network