AMCG00002678 (nipal2)


Basic Information

Item Value
gene id AMCG00002678
gene name nipal2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26183699 ~ 26199261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002678
ATGGTGTTtgactttccttctttttcctCCCCCCAGAAATACACACATGTGCACTTGTCTCAGCAGCAAGGCTCCAAGCCCTATTACAAGACTGGCATTTGGTGGTGTGCAATCATTCTAATGGGAGTTGGGGAGCTGGGCAACTTTGCAGCCTACGGGTTTGCCCCAGCTACACTCATTGCACCGCTGGGATGCGTCTCTGTCATTGctaGTGCAGTAATGTCTGTAATTTTCCTTAAAGAGACGTTACGTGCTTCTGATATACTGGGTGGAGCTCTGACTGTTACAGGAACATACCTTCTTGTCACTTTTGCCCCCAACATGTCACAGAAAATTACAGCTCAGACGGTCCGGAAGTACTCTGTCAGCTGGCATTTTCTCGTTTACCTAgtCTTTGaaattattgtgttttgcaTCCTGCTTTACCTGTACAAGAGGAAGAAGCTGAAGCACATTGTTGTGGTGATGATGTTGGTGGCTTTGCTGGCCTCTGTGACAGTCATCTCTGTGAAGGCTGTCTCAGGCATGATAACTGAGTCTGTGAAAGGCAGCTTGCAGCTCACGTACCCCATATTCTATGTGATGGTGGTGGTAATGGTTGCTTCCTGTGCTTTTCAGATCAAATTTTTGAACCAGGCGATGAAGCTTTTCAATGCAACAGAAGTCGTGCCCATCAACTTTGTATTTTTCACGGCCAGTGCAATAATTGCAGGAGTAGTATTTTATCAGGAGTTTTATGGTTTAGCTTTGCTAAATatcttcatgtttttgtttgggtaA

Function

symbol description
nipal2 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane.

NR:

description
PREDICTED: NIPA-like protein 2

GO: NA

KEGG:

id description
K22733 NIPA, SLC57A2S; magnesium transporter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002678 True 780 mRNA 0.45 7 26183699 26199261

Neighbor

gene id symbol gene type direction distance location
AMCG00002675 stk3,LOC107724280,LOC107702102,LOC105907728 coding upstream 108250 26064621 ~ 26075449 (+)
AMCG00002676 stk3,LOC100711192,LOC103135175,LOC106938036 coding upstream 139362 26041287 ~ 26044337 (+)
AMCG00002677 stk3,LOC103394381 coding upstream 153032 26026545 ~ 26030667 (+)
AMCG00002669 NA coding upstream 538670 25622325 ~ 25645029 (+)
AMCG00002668 NA coding upstream 564934 25609694 ~ 25618765 (+)
AMCG00002683 rida,LOC102789025 coding downstream 35022 26234283 ~ 26241005 (+)
AMCG00002691 NA coding downstream 339908 26539169 ~ 26543912 (+)
AMCG00002692 NA coding downstream 437710 26636971 ~ 26648551 (+)
AMCG00002695 LOC108273070,LOC107702088 coding downstream 522525 26721786 ~ 26731801 (+)
AMCG00002696 LOC103376374 coding downstream 546903 26746164 ~ 26748406 (+)
G125109 NA non-coding upstream 321393 25854158 ~ 25862306 (+)
G125022 NA non-coding upstream 726812 25456656 ~ 25456887 (+)
G125011 NA non-coding upstream 854838 25328180 ~ 25328861 (+)
G125005 NA non-coding upstream 880544 25299701 ~ 25303155 (+)
G124999 NA non-coding upstream 1044427 25138980 ~ 25139272 (+)
G125220 NA non-coding downstream 173318 26372579 ~ 26376125 (+)
G125288 NA non-coding downstream 454724 26653985 ~ 26655168 (+)
G125290 NA non-coding downstream 455978 26655239 ~ 26655457 (+)
G125296 NA non-coding downstream 462463 26661724 ~ 26662436 (+)
G125320 NA non-coding downstream 584521 26783782 ~ 26784610 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other upstream 799387 25374942 ~ 25384312 (+)
AMCG00002650 NA other upstream 1406884 24761884 ~ 24776815 (+)
G124863 NA other upstream 1761086 24422252 ~ 24422613 (+)
G124769 NA other upstream 2502314 23677935 ~ 23681385 (+)
G124689 NA other upstream 2893164 23152648 ~ 23290535 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 76053 26275314 ~ 26279137 (+)
G125219 NA other downstream 162951 26362212 ~ 26369525 (+)

Expression


Co-expression Network