AMCG00002675 (stk3,LOC107724280,LOC107702102,LOC105907728)


Basic Information

Item Value
gene id AMCG00002675
gene name stk3,LOC107724280,LOC107702102,LOC105907728
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26064621 ~ 26075449 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002675
ATGATTCCCACGAACCCACCTCCGACATTCCGAAAACCTGAGCTCTGGACAGATGAGTTCACAGATTTTGTGAAGAAATGTTTAGTGAAGAACCCCGAGCAGAGAGCTACTGCCACTCAACTGTTACAgCACCCCTTCATTAGAAATGCAAAGCCAGTGTCTATCCTGCGGGATTTGATAACAGAAGCCATGGAAATCAAGGCCAAGAGACACCAGGAGCAGCAGAGGGAgctggaagaggaggaggaaaacaCAGAtgaggaggtggaggtggacTCCCACACCATGGTGAAGACTGGCTCTGAGAGTGCGGGCACAATGAGAGCGTCGGGCACAATGAGCGACGGGGCTCAGACCATGATCGAGCACAACAGCACCATGCTGGAGTCAGACCTGGGCACCATGGTGATCAACAGCgacgaagaggaggaggatggcaCCATGAAGAGTGAGTACCTAGGTGCATCTCAGCAGCTGAACACAAATACTGGGGCAGAAGGTATCCCTTACAATTGA

Function

symbol description
stk3 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within camera-type eye development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human STK3 (serine/threonine kinase 3).

NR:

description
PREDICTED: serine/threonine-protein kinase 3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002675 True 516 mRNA 0.52 3 26064621 26075449

Neighbor

gene id symbol gene type direction distance location
AMCG00002676 stk3,LOC100711192,LOC103135175,LOC106938036 coding upstream 20284 26041287 ~ 26044337 (+)
AMCG00002677 stk3,LOC103394381 coding upstream 33954 26026545 ~ 26030667 (+)
AMCG00002669 NA coding upstream 419592 25622325 ~ 25645029 (+)
AMCG00002668 NA coding upstream 445856 25609694 ~ 25618765 (+)
AMCG00002667 rnf19a,LOC102791892,LOC107698652,LOC106570794 coding upstream 491061 25556983 ~ 25573560 (+)
AMCG00002678 nipal2 coding downstream 108250 26183699 ~ 26199261 (+)
AMCG00002683 rida,LOC102789025 coding downstream 158834 26234283 ~ 26241005 (+)
AMCG00002691 NA coding downstream 463720 26539169 ~ 26543912 (+)
AMCG00002692 NA coding downstream 561522 26636971 ~ 26648551 (+)
AMCG00002695 LOC108273070,LOC107702088 coding downstream 646337 26721786 ~ 26731801 (+)
G125109 NA non-coding upstream 202315 25854158 ~ 25862306 (+)
G125022 NA non-coding upstream 607734 25456656 ~ 25456887 (+)
G125011 NA non-coding upstream 735760 25328180 ~ 25328861 (+)
G125005 NA non-coding upstream 761466 25299701 ~ 25303155 (+)
G124999 NA non-coding upstream 925349 25138980 ~ 25139272 (+)
G125220 NA non-coding downstream 297130 26372579 ~ 26376125 (+)
G125288 NA non-coding downstream 578536 26653985 ~ 26655168 (+)
G125290 NA non-coding downstream 579790 26655239 ~ 26655457 (+)
G125296 NA non-coding downstream 586275 26661724 ~ 26662436 (+)
G125320 NA non-coding downstream 708333 26783782 ~ 26784610 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other upstream 680309 25374942 ~ 25384312 (+)
AMCG00002650 NA other upstream 1287806 24761884 ~ 24776815 (+)
G124863 NA other upstream 1642008 24422252 ~ 24422613 (+)
G124769 NA other upstream 2383236 23677935 ~ 23681385 (+)
G124689 NA other upstream 2774086 23152648 ~ 23290535 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 199865 26275314 ~ 26279137 (+)
G125219 NA other downstream 286763 26362212 ~ 26369525 (+)

Expression


Co-expression Network