CI01000054_03424472_03425704


Basic Information

Item Value
gene id CI01000054_03424472_03425704
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3423054 ~ 3426433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_03424472_03425704.mRNA
CAATAAAAACCTGAACAATGTGCTCTTTCAATTTTCACTGTTCTGTACAATAATTGTCTTTATTAAAGTTACACAATTAAATAAAATATAATAATTATAATGAACGATAAAGTAATATAAACAATAAATATCAACCAACCAACCAATCAATCAATCAATCAATCAAATCAATCAATTTACTTTGCAGGAGCAATATTGAAGGGATAGTTCATTAACTATTGAATCCAAAAAGTTTTGTAATCTATTCACCTTAAATTTTTTTGTCCTCTATGGCACTCAAATGGAGACAGATGAGGATGGTACCGTAACTGTGACTGCCAAGATCAAGCTATCTTTCAAAACTTCTAAAGCCATACAATATGTTTATGCTAGGAAAAGACTGGAATTTAAGTATATATTTACTTAAAAATCTTTTCCATTTTCCTCTCAATCTTCTTCAAATCTGGCATGTTAATGATACAAAACAGAGTGTATTTTTTTGCCCAATGCTGGAAGCAGAGCACACTCAACACCATAAAGAGTGATGAACAAAAGAAACTGCATGTAGTTCATTGGTTCTTGTGTGTTTTGTCAACACACTAGGTCTGAATATGCTTACGTGAACGAGATTTAAGAATTTTAACTGTAATTTTTATAAGCGCCCACCGGCCTGAACTACAGCCTCCTGCAGTCAGATTCTTCTGTGCTATTTGCTGAGCCCAGGGCTGTCACAGAGACAGGTGCCATATATCTCAGGACACCTATTTCTGTTGTATCTGTCAAGTAGGGGCATTTTCTGTGCACTATCCTATAAAAAATAGTTTACAGCACCTTAAATGACCAGGTGAAAAAAACATTGCGAGGAATCTCAGTATCAGCCACAAATACACACTCAAAAAAAACGCTCCTTCAATCCAGAGCATTTTGCAAACAAGTTCAATGGTTCAAAACACTGCAGGAATGCAGTCATGCTTTGCAGAATCAATATACCCTGCTTTTGATGTGAGCACTTTTGTTTGTAAGCTTATAATTTTTGAACTGGCTTGGTAAAATGGTGTATTTCCTATTTGTGTGTTTTAGGGCTTGCATAGACTAGTTGGGTAGTCGACTACTTCAACTGCTAGTCGGTGCTGTCTGAAAAGTCAAGAGTTTGAGCTCACCATCTACCTAAAGAAGCCTCAAGACAAGTCATGAGATAAGATGTAAATCCTCCACCCAGCATCTCAATCTCCAACTACAAACTTGAGGTTGTCCTTGACTTTGTGTACCTCGGATCTTTCTCTGTGCTGAACAGGTTCATTGGGAAGGTCATGCGTTTTGGTCAATCGGATCACAAGTAGATGAGGGAGACACATCATCGTTTACATCTGGTGTTTTAGTCCATCTCTTTTGTCCATTTTCAATCACTTCTGTCCTGATTTCTTCGAGGGGAGGCTTGCATGGTGAGCACGCTCCTCTATGGCAGCGAGTCATGGACTTGGCTTGAAAGTACACTCAATGCATTCCACTTGCATTGCCTCCGCTGCATCCTGGGCATTACCTGGCAGGACAAGATCCTCAACTGCACCGTCATTGAGAGAGCACGGATATCTTCACTGTTCACCCAGGCTGTGCTGAAAGGCCTCTCCAACAGCAGTCTGAGACAAAGCGGCTATGAAGGCCAGGAGCCAAACTATCCTACCTGCCTCAGAGTTCATCTGCAGGTTCTGTGGCAAATTGAAATTCTCCCAAATTGGACTTCTGAGTCAGAACCAAAGCTGATCCAAGGTGGACAGCCGGCAGCAACTGGCAGACGTGCATGTTTGGCTAGACCACGCAAGTCGTCTGATGTATTAATAGACCTGCGGCCATCTGTTTCTGGGCCACATATCGGCCAGTCACTCTCTCGTCGGACCTTGATCCGAACCGAAACGCTGAAGCTCGGCTAATGCTAATGCTAACAGACACTTGAATCTGTTCCGGCTCAGACTCTCAGCATGAGCTTCACCTTTAAGTGGATGAGGCTCAGTTAATTGAGGATGGTGTTATAATTGGATGCCTGTTTTTTTGTTAAGTGTTTCTGGTGGAGTCTGTGCAGTTGCTAAGTGCAGCGCTCCTCTGAAGTGATTGCTGTAATGAACGTTTAGCACCGGCCTGTTGTTTTCCAGTCTATTCGCTCTAGCGCTGCTGGGTAATTACTCAGGAGAGCGATGTAGGCTTCTTCTCAAGGGTTAGTTGCTGAAGTGAGCTGCGCTCAAAACCACCTGCATATCACACCTCTCTGAGGCAGGACGAAGGGAAATCCCTGAGATGCTTAAAAGAAGTCTTCAGAGGGCTTAATCTAATGACAACATACAAATGCAAGATACCTCACAAATTAACCTTGCAAACACAGTGTCTTACCACTAGTGAGTCTGTGCTGCTCTGAATAATACAAGCCGCTAATTAATTTTGGCCACACAGGCTAAACAAAATGATATAAACCTCATAGGAGTTTACAAGAGGCTAAAATGGTTTGTCGATCATTACAAACATTAGCCAGAGGATTCTCAACAACTGCCATTTTTAATAACATTAATAATGTGCTGCTAAAAGCACCACATTGTACATTAATGTGTAAAATGCACATATCAACAATAGACATTTTAATGCTTATGTTATGACAGACCTAAGAGCTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104941165

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_03424472_03425704.mRNA True 2636 mRNA 0.41 2 3423054 3426433

Neighbor

gene id symbol gene type direction distance location
CI01000054_03016199_03016501 NA coding upstream 406361 3015959 ~ 3016693 (+)
CI01000054_02975008_02985278 EFCAB1 coding upstream 437719 2974588 ~ 2985335 (+)
CI01000054_02951289_02967370 NA coding upstream 455394 2950915 ~ 2967660 (+)
CI01000054_02824071_02824355 NA coding upstream 598412 2824025 ~ 2824642 (+)
CI01000054_02652696_02685815 CALCR coding upstream 737221 2652696 ~ 2685833 (+)
CI01000054_03558982_03663042 ADGRB2 coding downstream 132549 3558982 ~ 3663042 (+)
CI01000054_03670684_03671857 NA coding downstream 244251 3670684 ~ 3672003 (+)
CI01000054_03707961_03761024 ADGRB2 coding downstream 281402 3707835 ~ 3761112 (+)
CI01000054_03848427_03914231 NA coding downstream 421994 3848427 ~ 3914231 (+)
CI01000054_03955331_03962388 NA coding downstream 528898 3955331 ~ 3962395 (+)
G231273 NA non-coding upstream 12129 3410599 ~ 3410925 (+)
G231270 NA non-coding upstream 17535 3405217 ~ 3405519 (+)
G231209 NA non-coding upstream 63521 3359271 ~ 3359533 (+)
G231015 NA non-coding upstream 283391 3139393 ~ 3139663 (+)
G230856 NA non-coding upstream 365835 3056864 ~ 3057219 (+)
G231286 NA non-coding downstream 6875 3433308 ~ 3433582 (+)
G231293 NA non-coding downstream 23347 3449780 ~ 3450241 (+)
G231294 NA non-coding downstream 24958 3451391 ~ 3451658 (+)
G231295 NA non-coding downstream 25898 3452331 ~ 3452550 (+)
G231350 NA non-coding downstream 405869 3832302 ~ 3832605 (+)
G230689 NA other upstream 335662 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 1118672 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 1696261 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 1761489 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 1840985 1578022 ~ 1579356 (+)
G231863 NA other downstream 980719 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 2196582 5608457 ~ 5634804 (+)
G232558 NA other downstream 2567227 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 2877874 6305908 ~ 6312163 (+)

Expression


Co-expression Network