XLOC_015155


Basic Information

Item Value
gene id XLOC_015155
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3606030 ~ 3607401 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033461
tttaagtctctgtatttaatgctgtcaccgtgctgctgtcatgtccacgcgtttttgtcgcgggagcaacagagAGGATGACTCTAGGAGAACCGGcacgatctggccaatggcagcaggagactctgaggtgcgaaaggatcaaacacaaacacctgcagcgcggattatatttactactaaaaggcttacagtaagattatttattaaatacatttacataacgaaaacgaaggaggtttttgctataattccagttagtttcagttagtttttttatgtacacaatacagtttcagttagttctagttgttgaaaaaactctcgtttttatttttatttcagttaacgacaattattttacattttagtttttgttttttcgataactataataaccttggtttgacacccctgctttaagataTTATATTACTGTTTATGCATGTCTGATTACAATTCGTAAGTAATTCACCCATCTCTAGTAATGGCTGCTGTGTTTTTCTGATCACAGAAACTACTCACCTCTGGACCCTCTGGCTGTCGCTGGGCATGTCCACATTACGGTTGAACTGGTAATTGAGAACCTCCGTGCCAAAAAGATCATATTCCAGGTAGCTTCCCATTCTCGCAAACTCCAGCAGCTCTCCGTGATCATATATGCTTCTGTAAGGCACACAAGTGACAAAATAGAGGTTATTCAAGTAGATCAAAAGCCCAGAAATAGCTCTCAAATGTCAGATTGTTCTGAAGTCAATGCACTTTTGAATgggattttaattaaattaaaatagtgtAGACATAAAATACATTCTGCTTTTTAGTTTGTACTTGTTTTGGGACTACAGAGGGCAGAAATTGCACCTGATACTAAAATGCATTTCTTGTCGGTTCGACCGTAAATGGATGGGATTAAATACAGGCACAAACGGTAGAAATTGTCATGACTTGTCCACTTTCAGACAACTTTCACAAGCAGTCGGAAAAGCGTCCAAAAGAACGATGTGGTCAAATGAGTTAAAAAGACAAGATCTTTGTAGAATGTGTTATACGAAAAGCAAGGTAATCATGTTAAACCTGTTAATACCAGGTACAACCAAGCAATGAGTCTTGGTTGACTTTTTGTGAAGACACGTTAATACCAGGTTGAAACAGAGATAATAAACGTCATCGAATGGCAAACAGGTAAACTTACATGAAAGCTTTAGCGaaggttctaccaggaagactgagatgtcacgtcattcataataattatctcgtcagcctataacaaccaagcaagccatgtatataagctcatctaaacaatctgtttcgctgtattcaggtgacgttgcggaagtttccctccatcctccccatcaccacc

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:1905770 regulation of mesodermal cell differentiation biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0007501 mesodermal cell fate specification biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0043049 otic placode formation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1905902 regulation of mesoderm formation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048333 mesodermal cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:2000380 regulation of mesoderm development biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0043034 costamere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033461 True 1372 lncRNA 0.38 1 3606030 3607401

Neighbor

gene id symbol gene type direction distance location
XLOC_015154 c1ql3b coding upstream 8055 3595333 ~ 3597975 (+)
XLOC_015153 gpt2l coding upstream 33030 3533117 ~ 3573000 (+)
XLOC_015152 fuz coding upstream 86323 3516913 ~ 3519707 (+)
XLOC_015151 SERP1 coding upstream 96785 3502430 ~ 3509245 (+)
XLOC_015150 cx47.1 coding upstream 107579 3472832 ~ 3498451 (+)
XLOC_015156 egfra coding downstream 88637 3696038 ~ 3820159 (+)
XLOC_015157 npc1 coding downstream 216412 3823813 ~ 3866971 (+)
XLOC_015158 mpp7b coding downstream 273599 3881000 ~ 3894103 (+)
XLOC_015159 mkxb coding downstream 378682 3986083 ~ 4009200 (+)
XLOC_015160 mib1 coding downstream 467011 4074412 ~ 4161277 (+)
XLOC_015144 FP102843.1 non-coding upstream 431035 3174870 ~ 3174995 (+)
XLOC_015143 NA non-coding upstream 501301 3100598 ~ 3104729 (+)
XLOC_015141 ipp non-coding upstream 583375 2994052 ~ 3022655 (+)
XLOC_015126 NA non-coding upstream 1581357 2021153 ~ 2024673 (+)
XLOC_015120 NA non-coding upstream 1935010 1666551 ~ 1671020 (+)
XLOC_015162 BX842700.1 non-coding downstream 674281 4281682 ~ 4288546 (+)
XLOC_015166 NA non-coding downstream 1287455 4894856 ~ 4898290 (+)
XLOC_015175 NA non-coding downstream 2119063 5726464 ~ 5729675 (+)
XLOC_015176 NA non-coding downstream 2123726 5731127 ~ 5736505 (+)
XLOC_015178 NA non-coding downstream 2233707 5841108 ~ 5884404 (+)

Expression


Co-expression Network