XLOC_015151 (SERP1)


Basic Information

Item Value
gene id XLOC_015151
gene name SERP1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3502430 ~ 3509245 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030441
ACAGTTGTGACGGTCGCCAGTTCACTTTCTCACGCCACCAGCAGCATCTGCAACCATGGTCGCCAAGCAGAGGATCCGTATGGCCAACGAGAAACACAGCAAAAACATCACCCAGAGAGGGAACGTCAAATCGTCGAGGAACGTCAGTGAGGATAAAGTGTCGGTGGGACCATGGCTCTTGGCGTTATTCGTCTTTGTTGTTTGCGGTTCAGcaATATTCCAGATCATCCAGAGCATTCGCATGGGCATGTGAACAGGACCAGTGACCTTTCGCCAGTTCTTTCGCCTGAATTTTGCCAAGGAAGCCTCTCTTAAAGGCTTTGTGTTgatgatattttttaaaaatcgatTTCTCTTCTACGAGGTGCAACAATCCTGTCATTCCTCTCTGGTGCCTTTACAATGAAGAAAAATCAGAAAGCCATAAAATAACATTCCGATCAATTGTAACGTGATCGTCTGTCAATCTACTCTGATCTAATGTCAAAATCTTAACATGTCGCAAAGAGCGAGGTGATTCCTAATCCCTGACTTCTCGTTCATTCCTGAAATTATTgtgcaaaaatgtttaaaatgtgtttgcttTTTGGAGATCCAGAAACAGCCAGCTATTTTCTACTTTGCACAGGATGAAGTGTTACGAATGAAACGCCAGCCAATTCATCTAAATCACAAATGTTTTTCGAAAACTGCATTACCTCTCTTCTATGTCCAGTAATTTAACTGCTGCTGCTTTCCTTCCAGTATCTTTGGCCTAAATAATCAAGTTCTCTGGCACATAATCTTGTCATTGTGGTGCTGTTGACCATAATACAGCGAGGCTTAGCGATGCAGCTTTTTCAGATGCTATAAATGTCATGCTAGCGTAATGGAGTGAAGAGGAACAGAGCTGGacgaaaataaaatgtttcaaaaaa

Function

symbol description
serp1 Predicted to be involved in endoplasmic reticulum unfolded protein response and protein glycosylation. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; blood vessel; hatching gland; periderm; and pharyngeal arch. Orthologous to human SERP1 (stress associated endoplasmic reticulum protein 1).

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0015031 protein transport biological_process
GO:0006486 protein glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8741 Predicted to be involved in endoplasmic reticulum unfolded protein response and protein glycosylation. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; blood vessel; hatching gland; periderm; and pharyngeal arch. Orthologous to human SERP1 (stress associated endoplasmic reticulum protein 1).

Ensembl:

ensembl_id ENSDARG00000076223

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030441 True 917 mRNA 0.42 3 3502430 3509245

Neighbor

gene id symbol gene type direction distance location
XLOC_015150 cx47.1 coding upstream 3979 3472832 ~ 3498451 (+)
XLOC_015149 cyp8b3 coding upstream 32411 3468069 ~ 3470019 (+)
XLOC_015148 cyp8b2 coding upstream 47874 3452590 ~ 3454556 (+)
XLOC_015147 ACKR2 coding upstream 72976 3428357 ~ 3429454 (+)
XLOC_015146 jmjd4 coding upstream 88362 3403264 ~ 3414068 (+)
XLOC_015152 fuz coding downstream 7668 3516913 ~ 3519707 (+)
XLOC_015153 gpt2l coding downstream 23872 3533117 ~ 3573000 (+)
XLOC_015154 c1ql3b coding downstream 86088 3595333 ~ 3597975 (+)
XLOC_015155 NA coding downstream 96785 3606030 ~ 3607401 (+)
XLOC_015156 egfra coding downstream 186793 3696038 ~ 3820159 (+)
XLOC_015144 FP102843.1 non-coding upstream 327435 3174870 ~ 3174995 (+)
XLOC_015143 NA non-coding upstream 397701 3100598 ~ 3104729 (+)
XLOC_015141 ipp non-coding upstream 479775 2994052 ~ 3022655 (+)
XLOC_015126 NA non-coding upstream 1477757 2021153 ~ 2024673 (+)
XLOC_015120 NA non-coding upstream 1831410 1666551 ~ 1671020 (+)
XLOC_015162 BX842700.1 non-coding downstream 772437 4281682 ~ 4288546 (+)
XLOC_015166 NA non-coding downstream 1385611 4894856 ~ 4898290 (+)
XLOC_015175 NA non-coding downstream 2217219 5726464 ~ 5729675 (+)
XLOC_015176 NA non-coding downstream 2221882 5731127 ~ 5736505 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G23628 NA non-coding CI01000003 null 1859917 ~ 1863447 (-)
rainbow trout (Oncorhynchus mykiss) LOC110507347 NA misc NC_048591.1 CM023245.2 3255364 ~ 3259878 (+)
eurasian perch (Perca fluviatilis) G19551 NA non-coding NC_053113.1 CM020910.1 26124237 ~ 26128420 (-)
striped catfish (Pangasianodon hypophthalmus) G22370 NA non-coding NC_047596.1 CM018542.1 6054144 ~ 6054618 (+)