G23628


Basic Information

Item Value
gene id G23628
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1859917 ~ 1863447 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU26656
CAAAAATCGACGTAGTTTTCTCTTCATCCTCACTAGTAGTTTGTGTTGTGTTCGTCATATTTGTGACTGACCAGCTCCCTTTTCCAACACACCAGTATTTGCAACGATGGTCGCCAAACAGAGGATTCGTATGGCCAACGAGAAACACAGCAAAAACATCACCCAGAGAGGCAACGTCAAATCGTCGAGAAACGTGAGTGATGATAAAGTTTCGGTGGGACCGTGGCTCTTGGCACTTTTCATCTTTGTTGTTTGCGGCTCAGCAATATTCCAGATCATTCAGAGCATTCGAATGGGCATGTAAAGAGGACCAATGATGTCTCAACTATCCACTCCTTGCCACTTCCACATACTGCACCCAACTTTGCCAAGGAGTTTTTCTAAAAGGCTTTTTGTTGATTTTATTGATTTATCTTCTTCTGTGAGGTGCAACAATCCTGTCATTCCTCTCTGGTGCCTTTTTAATGAAGAAAAATCAAAAAGCCATAAAATTGCATTCCTATCAATTGTAATGTTATCTTCTGTCAATCTACCTTGATGTAATGTAAAAATCTTGATATGTCGCAAGGAGTGATGTGATTTGTAACGCCTGACTTCTCGATCATTCCTGAAATAATTGTGCAAAAATGATTTAATGTGTTATTGTTTGGTTTTTGGACCCCAGAACACTTAACCATTTTGTAGTTTGCACAGGATGAAATATTACGAATGAAAAGCCAGTCAGCTCATCTAAATCACAAATCACACCTTGTATTACTTTTCTTTTATCTGTTTTCTTAATTTAATAGCTGCCTTCTTTCTTCCAGAATATGAAACTTCAACCTGAATAATGTAGTTCTCTGGCACATATTCTTGTTATTGTGGTACAATTTACCGTAATAAAATGAGGCTTAGCAGAAATTCAGCTTTTCTCAGAACAGATGATGTTATAGTCATGTGTCATGATAGCGTAATGGAGGAAGAGGAACAAAGCTGGACTAAAATAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU26656 True 988 lncRNA 0.38 3 1859917 1863447

Neighbor

gene id symbol gene type direction distance location
CI01000003_01856167_01857447 FUZ coding downstream 2470 1854126 ~ 1857447 (-)
CI01000003_01836259_01849326 GPT2L, ALAT2 coding downstream 10591 1836200 ~ 1849326 (-)
CI01000003_01807697_01809455 C1QL3, C1QL3B coding downstream 50462 1807130 ~ 1809455 (-)
CI01000003_01632757_01671893 EGFRA coding downstream 188024 1630607 ~ 1671893 (-)
CI01000003_01601113_01624224 NA coding downstream 235693 1600965 ~ 1624224 (-)
CI01000003_01870680_01887249 NA coding upstream 6898 1870345 ~ 1887255 (-)
CI01000003_01931888_01950409 DNAJB4 coding upstream 67573 1931020 ~ 1950496 (-)
CI01000003_02091233_02092464 NA coding upstream 227637 2091084 ~ 2092685 (-)
CI01000003_02221239_02254635 PIGK, PIGK.S coding upstream 357751 2221198 ~ 2254635 (-)
CI01000003_02353398_02370544 ZZZ3 coding upstream 489951 2353398 ~ 2370544 (-)
G23657 NA non-coding downstream 55983 1803563 ~ 1803934 (-)
G23652 NA non-coding downstream 69136 1790370 ~ 1790781 (-)
G23639 NA non-coding downstream 69987 1789437 ~ 1789930 (-)
G23582 NA non-coding downstream 290021 1552659 ~ 1569896 (-)
G23644 NA non-coding upstream 1151 1864598 ~ 1866129 (-)
G23675 NA non-coding upstream 52055 1915502 ~ 1915724 (-)
G23694 NA non-coding upstream 106093 1969540 ~ 1975388 (-)
G23696 NA non-coding upstream 252083 2115530 ~ 2116646 (-)
G23755 NA non-coding upstream 254706 2118153 ~ 2118519 (-)
G22716 NA other downstream 1790173 50512 ~ 69744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015151 SERP1 coding NC_007113.7 CM002886.2 3502430 ~ 3509245 (+)
rainbow trout (Oncorhynchus mykiss) LOC110530150 NA misc NC_048572.1 CM023226.2 55085968 ~ 55089720 (-)