XLOC_015380 (dnajc1)


Basic Information

Item Value
gene id XLOC_015380
gene name dnajc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21174998 ~ 21182561 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030791
ACTAGATCTTTCGTGCTTATTGGCTCGCGCTGTGGCGGCTGCATGTGAAAGCGCACACGTACAGCAGGCTGAGCTCAAGCTATGGGCCTGTCTGAGCTAAAAGACGGGAGGTTAGGCTGATATCCTCTCGAAATCAAGGGTCTCCAAATGGATAGTGGGTGGTAAACCTTCGCGAATATAGCCTACAAAATCAGACATGGCTTTGCCCGGGATCATTGCGGTAGCGTTGTTCTCCGGGCTGCTCGTGATTCAGCCAACGCCGACGTTAGCATGGGACGCAGACCTGGAGCTTTTCGACCTAGTGGAGGAAATCCCTCAAACATTTTACGAGTTCCTGTCGGTTAATCAGGATGCATCCTCTTCTGAGATCAGGAAGGCATATAGAAAGCTTTCTCTTATTTTGCACCCTGATAAAAACAAAGATGAAAATGCAGAAAACCAGTTTCGACAGTTAGTTGCCATCTATGAAGTTCTCAAGGACGAGGAAAGAAGGCAAAGATATGATGACATCTTGGTTAATGGGCTGCCAGATTGGAGACAGCCTGTCTTCTACTACCGACGTGTTAGGAAGATGAGCAATGGAGAGTTGggcttcctcctcttcctcatcctGACCGTGGGTCACTATGCGGTTATATGGTCCATCTACCTTGAAAAGCAGTTAGATGAACTTCTGAGCAGGAAGAAGAGGGAGAAGAAAAAGAAGCAAACCAGCAAAATGACAGATGAGATGAAGCCTTTGGCTCAGGACAAAAATGAGAGatctgACAGGCCACACTGGCATGACATTTTACCTCTCAAATTAAGCATCTGGTTGTATTATTCAATAAAGTCTCTCCCTCATATCATACAGGATGTGAAGCAGTATTATAAAGATTATAAGGAAATGAAAGTAAAGGAGAAGGAAGAGGCAGAAGCTCTGGCAGAACAGGAAATGCAGCAGAAAGAAAAACGGCCCAAAGTGAAAAAAACGAAAGTGGAGTTTCCAGTCTATGAACCCAGTGCAAATGCAGCTTTCGCTCTAGCATATGATCAAGGAACATCTATTGAAGAAATTGAAGATCAGATGGATGACTGGTTGGAAGACAAAAAACAGCTGAAGAagaaaACACAAGAGTGGACAGAGGATGATCACAGTCAGCTCTCCCGTTGTATGGCCAAGTTTCCCGGTGGAACACCAGGACGGTGGGAGAAGATAGCTCATGAATTGGGCAGATCAGTGTCTGAGGTGACTGCAAAAGTCAAGCAAATCAAGGACTGTGTCACCAATACATCGGGGTTAGTGAAGTTCTCTGAACTGAAAGGTGGTGCGGTGATTGGAAAAAGCTCCAAAGCCATTACAGTGCCGGACAGTCTGATGACCCAGAGAGAGGAGCCTGTAGAGCAGCCGCTGGAGGATTCAGGAGAGCCCGAAGACTCCGAGAGCAAGGCACTCAGAAGACGGGCTAAAAAGTCTGCATCCGGGAGCACTGGAGCAGCGGAGGAGAGGATGAAAGGGCGCAGACAAAGAGACTTCGACCCTACAGCTGTGGATGAAGACAGTGAATATGAGAAGAAACCATCAGCTCCCAAAGAAAAAGCTGGTGCTGCTGAAGACGTCTGGACACAGAACCAGCAGAAGCTCTTGGAGCTGGCTTTACAGCAATACCCACGTGGCACCACTGAACGCTGGGACAAGATTGCTAAAGTGGTGCCTGGAAAAACCAAGGAGGAGTGCATGTGCCGTTTCAAACTGCTGGCAGAGTTGATTCAGAAACGGAAGCAGGCCAAGAGTTGACTGCTGCTCTTCAGTGTTTCACCATACCTCTCACCTGCTTTTATGTGCCTTAATGCGACCCTTTGTCCTGTTGTGAGACTACGTGccatgaaacatcagcattaatCATTGAAGAGAtctaaatgcacatttaaaaaggttttatttattttagaatccATTTCAGAgtcagatttttcttttcttttctttttttttttttggttctctaTGCAACCAGAAAATGTGAGGAGCTGAAGATGcgtgttttaatgttgttttccCCCTTATTTGGATGTTTTTCAGAAGTTGTGCTGGAATCATTTTGGTCATGTTACATAAAGGATTTGCATACAA
>TCONS_00030792
GCAGGCTGAGCTCAAGCTATGGGCCTGTCTGAGCTAAAAGACGGGAGGTTAGGCTGATATCCTCTCGAAATCAAGGGTCTCCAAATGGATAGTGGGTGGTAAACCTTCGCGAATATAGCCTACAAAATCAGACATGGCTTTGCCCGGGATCATTGCGGTAGCGTTGTTCTCCGGGCTGCTCGTGATTCAGCCAACGCCGACGTTAGCATGGGACGCAGACCTGGAGCTTTTCGACCTAGTGGAGGAAATCCCTCAAACATTTTACGAGTTCCTGTCGGTTAATCAGGATGCATCCTCTTCTGAGATCAGGAAGGCATATAGAAAGCTTTCTCTTATTTTGCACCCTGATAAAAACAAAGATGAAAATGCAGAAAACCAGTTTCGACAGTTAGTTGCCATCTATGAAGTTCTCAAGGACGAGGAAAGAAGGCAAAGATATGATGACATCTTGGTTAATGGGCTGCCAGATTGGAGACAGCCTGTCTTCTACTACCGACGTGTTAGGAAGATGAGCAATGGAGAGTTGggcttcctcctcttcctcatcctGACCGTGGGTCACTATGCGGTTATATGGTCCATCTACCTTGAAAAGCAGTTAGATGAACTTCTGAGCAGGAAGAAGAGGGAGAAGAAAAAGAAGCAAACCAGCAAAATGACAGATGAGATGAAGCCTTTGGCTCAGGACAAAAATGAGAGGTTGCCTATTAACCTGatggatgttttttttcataAGGAGTAAGGGATGTTAA
>TCONS_00030793
CTGCATCCTGTAACAGTATAAACAGCTGGATGCATCCTCTTCTGAGATCAGGAAGGCATATAGAAAGCTTTCTCTTATTTTGCACCCTGATAAAAACAAAGATGAAAATGCAGAAAACCAGTTTCGACAGTTAGTTGCCATCTATGAAGTTCTCAAGGACGAGGAAAGAAGGCAAAGATATGATGACATCTTGGTTAATGGGCTGCCAGATTGGAGACAGCCTGTCTTCTACTACCGACGTGTTAGGAAGATGAGCAATGGAGAGTTGggcttcctcctcttcctcatcctGACCGTGGGTCACTATGCGGTTATATGGTCCATCTACCTTGAAAAGCAGTTAGATGAACTTCTGAGCAGGAAGAAGAGGGAGAAGAAAAAGAAGCAAACCAGCAAAATGACAGATGAGATGAAGCCTTTGGCTCAGGACAAAAATGAGAGatctgACAGGCCACACTGGCATGACATTTTACCTCTCAAATTAAGCATCTGGTTGTATTATTCAATAAAGTCTCTCCCTCATATCATACAGGATGTGAAGCAGTATTATAAAGATTATAAGGAAATGAAAGTAAAGGAGAAGGAAGAGGCAGAAGCTCTGGCAGAACAGGAAATGC
>TCONS_00030794
GATGATCACAGTCAGCTCTCCCGTTGTATGGCCAAGTTTCCCGGTGGAACACCAGGACGGTGGGAGAAGATAGCTCATGAATTGGGCAGATCAGTGTCTGAGGTGACTGCAAAAGTCAAGCAAATCAAGGACTGTGTCACCAATACATCGGGGTTAGTGAAGTTCTCTGAACTGAAAGGTGGTGCGGTGATTGGAAAAAGCTCCAAAGCCATTACAGTGCCGGACAGTCTGATGACCCAGAGAGAGGAGCCTGTAGAGCAGCCGCTGGAGGATTCAGGAGAGCCCGAAGACTCCGAGAGCAAGGCACTCAGAAGACGGGCTAAAAAGTCTGCATCCGGGAGCACTGGAGCAGCGGAGGAGAGGATGAAAGGGCGCAGACAAAGAGACTTCGACCCTACAGCTGTGGATGAAGACAGTGAATATGAGAAGAAACCATCAGCTCCCAAAGAAAAAGCTGGTGCTGCTGAAGACGTCTGGACACAGAACCAGCAGAAGCTCTTGGAGCTGGCTTTACAGCAATACCCACGTGGCACCACTGAACGCTGGGACAAGATTGCTAAAGTGGTGCCTGGAAAAACCAAGGTAAGTATCAGACCAATCAGCCACAGTCGTCAGTATGAACCATTGTTTAATAAAAGGTAATACAATTAGGA

Function

symbol description
dnajc1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DNAJC1 (DnaJ heat shock protein family (Hsp40) member C1).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-061103-529 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DNAJC1 (DnaJ heat shock protein family (Hsp40) member C1).

Ensembl:

ensembl_id ENSDARG00000001940

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030791 False 2113 mRNA 0.46 12 21174998 21182561
TCONS_00030792 False 752 lncRNA 0.46 5 21175061 21177376
TCONS_00030793 False 617 processed_transcript 0.42 7 21175950 21177665
TCONS_00030794 True 653 lncRNA 0.50 3 21178045 21180098

Neighbor

gene id symbol gene type direction distance location
XLOC_015379 pip4k2ab coding upstream 18143 21090317 ~ 21156855 (+)
XLOC_015378 riok1 coding upstream 98428 21063660 ~ 21076570 (+)
XLOC_015377 rreb1b coding upstream 112693 21000334 ~ 21062305 (+)
XLOC_015376 arpc5a coding upstream 199321 20967673 ~ 20975677 (+)
XLOC_015375 pla2g4aa coding upstream 217636 20925899 ~ 20957362 (+)
XLOC_015381 si:dkey-29d8.3 coding downstream 3342 21185903 ~ 21300115 (+)
XLOC_015382 zbtb47a coding downstream 126711 21309272 ~ 21321749 (+)
XLOC_015383 ctdsplb coding downstream 173681 21356242 ~ 21381406 (+)
XLOC_015384 dre-mir-26a-2 coding downstream 192906 21375467 ~ 21375594 (+)
XLOC_015385 NA coding downstream 249164 21431725 ~ 21436401 (+)
XLOC_015372 rxrga non-coding upstream 398157 20725684 ~ 20776841 (+)
XLOC_015371 AL954134.2 non-coding upstream 541471 20632221 ~ 20633527 (+)
XLOC_015368 NA non-coding upstream 648168 20472150 ~ 20526830 (+)
XLOC_015363 NA non-coding upstream 1495669 19659710 ~ 19679329 (+)
XLOC_015362 NA non-coding upstream 1525657 19640952 ~ 19649341 (+)
XLOC_015388 NA non-coding downstream 351477 21534038 ~ 21537272 (+)
XLOC_015392 CT956055.1 non-coding downstream 700320 21882881 ~ 21971409 (+)
XLOC_015407 NA non-coding downstream 1728631 22911192 ~ 22916384 (+)

Expression


Co-expression Network