XLOC_015458 (gyg1a)


Basic Information

Item Value
gene id XLOC_015458
gene name gyg1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24936766 ~ 24944819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030913
GTGACCGTGCAAAGTCATGTCACTATAAATCCACTGACAGAGCACGTCCACTTTCTCTCCCAGCGTTTCAAGCCGAGGCCTCCTATTCGGTTCGGTTTGACGGTTTACGTGAGCCATGGCAGACCAGGCTTTTGTCACCCTTGCTACAACTGACAAGTATGCCAAAGGAGCAATGGTACTTGGCAAGTCTTTGAGGAACCACAACACATCGAAGAAACTAGTGGCCTTGATTGGCCCCCATGTCTCTGAACCCTCCAGAGCAGTGCTTCATAAAATCTATGATGAAGTCAGGCTGGTGGATGTGCTGGACAGTCGGGATGCTGCACACTTGGCCATGATGAAGAGACCTGACCTGGGTGTCACATTCACCAAACTCCACTGCTGGACTCTTACAGATTACTCCAAATGTGTCTTTATGGATGCAGATACTCTAGTTTTGTCTAACATTGATGAATTATTTGAGAGAGAGGAGCTTTCTGCTGCACCAGATCCTGGCTGGCCTGATTGCTTCAACTCTGGTGTGTTTGTCTTCCGCCCCTCCAATGAGACCTATGGGAAACTCATCACCGCCTGTTCAGAGGGTGGCAGCTTTGATGGTGGGGATCAGGGTGTCCTCAACAGCTTCTTCAGTGATTGGGCAACAGCAGACATTTCAAAACACCTTCCGTTCATCTACAACCTCAGCAGCATCGCCATCTATACTTATCTCCCAGCATTCAAGCAATACGGCCATGATGCCAAGGTAGTTCATTTCCTTGGCAAAGTCAAACCATGGGATTACAGTTTTGACACCGCAAGCAAAACTGTCAAGGGACAGTCCCATGATGCTGATATGCACCCCAACTACCTGCTGCAGTGGTGGGAGCTGTTCAGTTCTTCAGTGTTGGCTCTCATGAAGGAGGAGTACGGGGACCAACCCTTCTATTCTGGTTGCACAGAGGGTGATATCCATGTTGACGTGGGTCAGATGCACTTATCCCATCCCCCTTCACCTCCGATGTCGTCTCAGGAGCGGAAGCAGAAGTGGGAACAGGGTCAAGCGGACTACATGGGAATGGACTCTTTTGACAACATAGAGAAAAAGCTAGATTCCTTCCTTAAGTGAGATGTAGACAATCAGATCTAGTTTTGTACTGGAGTATGTATGTACAGTCCATAAAACATTTGGAGAAAGAAATTATTGTGCATTTTGATTTTTCTACCGTCCAAATCATCTATGCAGCCCTATGCACTTAACCTCTACCACACTGTggtctgtttgcaccagacattGACACAATGTTTCTGATCTCGCTGAACAATACACTACTGTTATCTTTCTCTTGTTCATCATGCCATAACATGATTATGGTCTCACAACATTCAGGTCTTACCTCCTTTTTAtttgcctttatttttttttccctcaatgtTTCTGATCtttcaaaaacaaagcaaacaatataattccttttttttttttttttttttttacgtcccAAATATAAATTGGGCAACCAAAACTGTTCACTTATCTTCTGGCCACCTTTGCAAAGACCTTGTTTACAAAACAACTAGTGTGCTGCAAACTTGCTTAACTGATAACTCTGATACACATCAGCAACTCTCTTATTGTGTGATTCTAAGATCACTCTGCATGCTCACTCCTGTACCAGTGACCAGTGGGTTTTTCTACACCTGGTTACAGCTAATAGTAATATTGTAGTTGACTGTAACCTTCTTGTTACTTTCCCCCACACTTGTAACATCTGAAATTAATAATCTACCAAAAAGAGACCCATAAACTCAGATAATCCTGTTGACAAACTGCATATAAagtagtgttaaaaaaaaaaacaaaagtcttttTCAAAGGatttgctttaataaacaacTGAACTTCACTAGTGTTCGCAGGAAAACTAAAGCTCCATGAGTGCTCGAATATCATCTATCCGGGCCTGTTTTGCATCCTGTGAGTTTTTCACTCCAAAAGCTTTATCCACCAGCTCCTGCTTCTTTTTCTGAATCTTCACCATGTTCTCCTCCACTGAGTCCTTCACGATAaactaaacaacagaaaacaggaaagtttcattttaaaatgacgtGGCTTAAGTTGAACAGTATATGGTCTGATATAACTAATGCTGACTTTTTAACTGTAAATGACAAACTATGGCTGATTGACTAAAACCTTAATTTCCTAAGTAGAGCTACATATAAGCTCTTAATGACAGCAATCATCTGCTGTTTAATTTCTGTTCATGTCATCTTAAGGGAAAACACTGTGACAAATCAGCTGGATGTTTGACTGTTGTAATCAGGACGCACATCAGTACTTGATTTAAAACACCTGAAAGTATTGCTGAACACGCCTACTTTGAATGGGAgaccattatttatttttatatatcagtCTGGTTGCCATAAATTCTTTTGTTGCACTGGTGGATTTGGCTGTAAGCAATAATTTGTATTtgaagtattttatattttaaaatgatttgtccTTCGATCTCCTTTTACCTCAAACCCACTGGCAGTCATCAATTGTCCTATATTGTGTAGACATTGATGTCACAGAATGAGCTTTTCTCCCATGTTGCAGTGTACGATTtcaataaagaagcattttcccCTCA

Function

symbol description
gyg1a Predicted to enable glycosyltransferase activity. Predicted to be involved in glycogen biosynthetic process. Is expressed in several structures, including female organism; immature eye; lens; liver; and myotome. Human ortholog(s) of this gene implicated in glycogen storage disease and glycogen storage disease XV. Orthologous to human GYG1 (glycogenin 1).

GO:

id name namespace
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2910 Predicted to enable glycosyltransferase activity. Predicted to be involved in glycogen biosynthetic process. Is expressed in several structures, including female organism; immature eye; lens; liver; and myotome. Human ortholog(s) of this gene implicated in glycogen storage disease and glycogen storage disease XV. Orthologous to human GYG1 (glycogenin 1).

Ensembl:

ensembl_id ENSDARG00000011934

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030913 True 2624 mRNA 0.41 7 24936766 24944819

Neighbor

gene id symbol gene type direction distance location
XLOC_015457 agtr1a coding upstream 4013 24931677 ~ 24932753 (+)
XLOC_015456 NA coding upstream 9012 24912293 ~ 24927754 (+)
XLOC_015455 NA coding upstream 30151 24903666 ~ 24906615 (+)
XLOC_015454 si:dkey-149i17.7 coding upstream 50014 24885987 ~ 24886752 (+)
XLOC_015453 rab3aa coding upstream 57953 24867534 ~ 24878813 (+)
XLOC_015459 stag1a coding downstream 74568 25019387 ~ 25108587 (+)
XLOC_015460 msl2a coding downstream 179679 25124498 ~ 25129409 (+)
XLOC_015461 NA coding downstream 185704 25130523 ~ 25137789 (+)
XLOC_015462 ppp2r3a coding downstream 253829 25198648 ~ 25291181 (+)
XLOC_015463 fndc3ba coding downstream 370772 25315591 ~ 25544850 (+)
XLOC_015449 NA non-coding upstream 215979 24716314 ~ 24720787 (+)
XLOC_015446 NA non-coding upstream 324698 24603292 ~ 24612068 (+)
XLOC_015443 NA non-coding upstream 438925 24484273 ~ 24497841 (+)
XLOC_015468 CR392012.1 non-coding downstream 1089356 26034175 ~ 26039606 (+)
XLOC_015470 NA non-coding downstream 1221759 26166578 ~ 26167419 (+)
XLOC_015473 CR788230.1 non-coding downstream 1341646 26286465 ~ 26287505 (+)
XLOC_015478 NA non-coding downstream 1568789 26513608 ~ 26519549 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07993172_07997413 GYG1A coding CI01000004 null 7993172 ~ 7997413 (+)