XLOC_015569


Basic Information

Item Value
gene id XLOC_015569
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32264355 ~ 32266672 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033584
TTTCAACGTAAAGTCTTTATTTTAGGATTCGAAGACTTGATAACcaagtttgattttctttctgaCTGAACTTACAGTGTAGCAaacacagacaaagaaaaaacaaagtaAGAGAGAGTGGCAAAATCCATCCTAAATGTAAAATTAGGACTGAATCAATCCAGTTTGTTCACTTAAATGTGAAGTTGTCCTCTTGACCGTTTCCAGGCTTTGATATGCTACAATATTAGCGACACAAGAACGGATCATCTGGAGTTGTGCTGGACTGAACATCGAAACAGACAAAACACGCTCCAACAGTGGCCTATTCAATAGGGTTGAAACAAAAACAGCTCGGTAGCGAACATTATTCCACAATCTTGAAGTTGGAGGTGTTTCTGTTATGCATCCATTGAATAATATTAACATGACCTAAAACCGAAGAACAAAACCCATAATAATAAACTACACTTGAAGGGTCCGTCCCTCTCCATGCTGAAACACTTTAGCCCTATAAATGTCAAATACTGTCATCATCAAATATAGTACAGATGGCATTCATTAATACatcttctttgttgttgttgctgttattacaATAACAGTTAAAAACCAAGAGTGAATGCTGGTCTCCCTGATAGGGTAACGAAAATAAGAGGCAGCGTTAGTTCATTCTGAGTCACACGGACAGTCAGTCACTCACCGCCGGGTCCCCTTGCACTTCAATtcaacttaaaaacaacaaaacaaacagtaagaAAAATCACATTCCACAGTCACCGTAAGCAAACAATGAAAACTCATCCTATAAGCGACCTGTAACAGATTGCGTTCTGCTCAACTAGATAAAGCCAACAACACTTGACCACTCAGATCCATACACTTTATAATTTATGCTTTACAATTGGTGAATAATCACCAGAGACCAGATGAAGAAGGTAGGTTATTGTATGATCTTTTGACAAGGACACTTTCCCAGAGTCTGAGGCATCGGTTTTGTCAGATTTGGCATTAAACAAACATGGGGGGCAAGGAATGAAGCGATCCCACAGATGCAACCAAAGCCGTAACCACCTTGTAGACACTGAAACGTTTTGATCATTTGATTTTTTAGTGGTTCcttaaattattacttattatgAGCATAATTGCTTGGAGAGTATATGAATATTGCTTATGAAGCACTAAGGTTGAAGCCCTGGTATACTTAAAGAGAAGTTGACTTTGAACAAAACCAGTTTGAATCAAAGGAGCAAACTGAGCTTTCTTCAGCTGGTAAACAAGTTTGggttacaattttttttaggtGTGACTCTGTGACCCCTGTTCAGTCTGTGAAAGTCGGACATCCATGGttaaaaatatactaaaaacTGCACTATTGTGAAAAGTGATGCGTAATTCTAATTTGAAGTAATGCTAACactgtttttttcatgtttaacaCTGTAAAGCTGCCTACTTCAAAGCTATATTCTATATAAAGtgctaaaaaaaatacatgtggCAGGATTTGACTAAAGAGCCAAGTTGCAGGTGAAGCAGTGGCCAGCTAGGGAAGTACTGAGCAGGTAAActtcacttctctgacctctaaaggtgctctagcgacagccATGGCCTTTAGTcaccttgttagagcaaccgactcccatacaaagattCGCCGGGTTCGATCCCAGCACAAAGCGGGCAGGCTAGTGGAGGACCGGcgaggttacattggtgccgtgacctggataggagtgaggtttaggggagtgactgtagcagaggccagctagtgaagtgctgagccggtaaacctcactcctctgacctctaaaggtgctctagtgacaaatgctagaggccatggtctttaccctccttgttagagcaaccgactcccatgcaaagaatcgccatGTTTGATTCCATCTTAGAGCGGGTTGGGTAGTGGAGGACTGGCGGGGTTAAGTTGGTGCCCTGACCTGGgtgagagtgaggtttaggggagtgATTGTAGCAGAGGCCAACTAGTGAAATGCtgagcaggtaaacctcactcctctgacctctaaaggtgctctagtgatagatgctagaggccatgctCTTTC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0016043 cellular component organization biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033584 True 2081 lncRNA 0.42 2 32264355 32266672

Neighbor

gene id symbol gene type direction distance location
XLOC_015568 NA coding upstream 75364 32149121 ~ 32188991 (+)
XLOC_015567 NA coding upstream 136425 32019642 ~ 32127930 (+)
XLOC_015566 mycb coding upstream 245984 32016256 ~ 32018371 (+)
XLOC_015565 otulinb coding upstream 254639 31942390 ~ 32009716 (+)
XLOC_015564 NA coding upstream 395600 31866499 ~ 31868755 (+)
XLOC_015570 NA coding downstream 119016 32385688 ~ 32390974 (+)
XLOC_015571 BX323559.6 coding downstream 338175 32604847 ~ 32608027 (+)
XLOC_015572 NA coding downstream 370408 32637080 ~ 32637505 (+)
XLOC_015573 NA coding downstream 378253 32644925 ~ 32647404 (+)
XLOC_015574 BX323559.3 coding downstream 435148 32701820 ~ 32719974 (+)
XLOC_015559 NA non-coding upstream 478073 31784012 ~ 31786282 (+)
XLOC_015554 NA non-coding upstream 723765 31537338 ~ 31540590 (+)

Expression


Co-expression Network