XLOC_016002 (onecut3b)


Basic Information

Item Value
gene id XLOC_016002
gene name onecut3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57504073 ~ 57563888 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031677
ATGGAGCTCACGATGGAGAACATTGGAAACATGCACGGCGTCGCGTCGCACGGCCAGCCAGGAGACCTGATGAATTCGTCGCACGGGAGACCACCGTCGGCTTCGCACCGGAATCTGGTCTCCCACGGCCGCTCGGCGATGGTGTCCAGCATGGCTTCGATTCTGGAGGGCGCCGGTGATTACCGGAGCGACCCCGCGCTTTCCGGACACCTGCATCCCGCTATGACCATGTGCGAGTCGGGGATGAGTTTATCGAACACGTACACCACCCTCACACCTCTTCAGCACCTGCCACCGATTTCTACAGTGTCCGATAAGTTTCACCACGCGCACCCGCACCCGCACCATCACGCCGCGCACCAGCGGCTCGCCACCGGGAACGTCAGCGGGAGTTTCACCCTCATGCGGGACGACCGCGGCCTCGCTTCAATGGGAAACCTGTACGGCCACTATCCTAAAGAGATGTCAGGCATGGGTCAGCCGCTGTCCCCGCTATCCAACGGACTCGGCTCACTGCACAATTCCCAACAAGCGCTATCCGCGTACGGACCCGGTGCGCACATCCCCAATGATAAGATGCTTTCTCCGGGCGGCTTTGAATCACATGCGGCGATGCTTTCCCGAAGCGAGGAGCACCTAGCGCGGAGTTTAGGAGGGCACGGGCATGGGATGATCTCCAATCTGAATGGCATGCACGCTCACGGGCATCTGCACACCCCGGCGAACGGCTCCATGCTGGCCGACAGAGAGAGGCACGGCGGCGGGCCAGGGCAAAGCGGCGGCTCGGGGCAGGTGGAGGAGATCAACACCAAAGAGGTGGCGCAGAGGATCACGGCCGAACTCAAGCGCTACAGCATCCCCCAAGCCATTTTCGCCCAGAGGATCTTGTGTCGCTCGCAGGGAACTCTGTCGGACCTGCTGCGCAACCCGAAGCCCTGGAGTAAACTCAAGTCCGGCCGCGAGACTTTCCGGCGCATGTGGAAGTGGCTGCAGGAGCCCGAGTTCCAGAGGATGTCTGCGTTACGGCTTGCAGCGTGCAAGAGAAAGGAGCAGGAGCAGCACAAAGACAGAAACATGGTGCCCAAGAAGCAGCGGCTGGTGTTCACCGACCTACAGCGCCGAACACTCATCGCCATCTTCAAGGAGAACAAACGACCCAGCAAGGAGATGCAGATCACCATCTCgcagcagctgggcctggagCTCTCCACGGTCAGCAACTTCTTCATGAACGCCCGGCGCCGCTGCGTGGACCGCTGGCAGGACGAGCACGCCAGCAGCCCCGGACAGCCCGGGACTTCAGCCAACACCTTTTCCAAGGCGTAA

Function

symbol description
onecut3b Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to human ONECUT3 (one cut homeobox 3).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130805-1 Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to human ONECUT3 (one cut homeobox 3).

Ensembl:

ensembl_id ENSDARG00000091059

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031677 True 1326 mRNA 0.61 2 57504073 57563888

Neighbor

gene id symbol gene type direction distance location
XLOC_016001 NA coding upstream 275780 57226376 ~ 57228293 (+)
XLOC_016000 NA coding upstream 291586 57204631 ~ 57212487 (+)
XLOC_015999 eef2b coding upstream 329119 57149002 ~ 57174954 (+)
XLOC_015998 NA coding upstream 382260 57117646 ~ 57121813 (+)
XLOC_015996 NA coding upstream 445435 57027888 ~ 57058638 (+)
XLOC_016003 NA coding downstream 55343 57619231 ~ 57620435 (+)
XLOC_016004 si:dkeyp-68b7.10 coding downstream 238072 57801960 ~ 57819139 (+)
XLOC_016005 plekhj1 coding downstream 284956 57848844 ~ 57909018 (+)
XLOC_016006 NA coding downstream 355563 57919451 ~ 57922716 (+)
XLOC_016007 NA coding downstream 434408 57998296 ~ 57998583 (+)
XLOC_015997 NA non-coding upstream 453980 57049763 ~ 57050093 (+)
XLOC_016009 NA non-coding downstream 459786 58023674 ~ 58024300 (+)
XLOC_016010 NA non-coding downstream 523882 58087770 ~ 58088301 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000077_00154438_00178595 ONECUT3, ONECUT3A coding CI01000077 null 154438 ~ 178595 (+)
bowfin (Amia calva) AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding CM030142.1 CM030142.1 11139798 ~ 11140832 (+)